Related Experiment Video
Updated: May 30, 2026

13:19
Chemical Triphosphorylation of Oligonucleotides
Published on: June 2, 2022
2,4,5-Triphenyl-1,3,2-dioxa-phospho-lan-2-one
David B Cordes1, Guoxiong Hua, Alexandra M Z Slawin
1School of Chemistry, University of St Andrews, Fife KY16 9ST, Scotland.
Acta Crystallographica. Section E, Structure Reports Online
|August 13, 2011
Summary
This study reveals the molecular structure of a dioxaphospholane compound. It highlights weak C-H⋯π and C-H⋯O interactions, crucial for understanding crystal packing and intermolecular forces in organophosphorus chemistry.
Area of Science:
- Organophosphorus Chemistry
- Crystallography
- Supramolecular Chemistry
Background:
- Understanding the three-dimensional structure and intermolecular interactions of organophosphorus compounds is essential for predicting their physical and chemical properties.
- The specific compound C(20)H(17)O(3)P, featuring a dioxaphospholane ring, has not been extensively studied in terms of its solid-state behavior.
Purpose of the Study:
- To elucidate the molecular conformation and intermolecular interactions of the title compound, C(20)H(17)O(3)P.
- To investigate the role of weak interactions, such as C-H⋯π and C-H⋯O bonds, in the crystal packing of this organophosphorus molecule.
Main Methods:
- Single-crystal X-ray diffraction was employed to determine the precise three-dimensional structure of the compound.
- Conformational analysis was performed on the determined crystal structure.
- Analysis of intermolecular interactions was conducted using crystallographic data.
Main Results:
- The dioxaphospholane ring adopts an envelope conformation.
- Benzene rings do not engage in face-to-face π-π stacking.
- Weak C-H⋯π interactions occur between adjacent molecules.
- Weak C-H⋯O hydrogen bonds are formed between methine H atoms and the oxide group of neighboring molecules.
Conclusions:
- The crystal structure is governed by a combination of weak C-H⋯π and C-H⋯O interactions, rather than strong π-π stacking.
- The observed conformational preferences and intermolecular interactions provide insights into the solid-state behavior of this class of organophosphorus compounds.
Related Concept Videos
Preparation of Diols and Pinacol Rearrangement
Compounds bearing two hydroxyl groups are known as diols. When the hydroxyl groups are located on adjacent carbon atoms, the diols are called vicinal diols or glycols. Under acidic conditions, vicinal diols undergo a specific reaction called pinacol rearrangement.
The reaction begins with transferring a proton from the acid catalyst to one of the hydroxyl groups, producing an oxonium ion.
The reaction begins with transferring a proton from the acid catalyst to one of the hydroxyl groups, producing an oxonium ion.
Structure and Nomenclature of Alcohols and Phenols
Overview
Alcohols are one of the most important functional groups in organic chemistry. The name of alcohol comes from the hydrocarbon from which it is derived. Alcohols are organic molecules containing the functional hydroxyl or –OH group directly bonded to carbon. Phenols have an OH group directly attached to a benzene ring. While alcohols are colorless, phenol is a white crystalline compound with a characteristic "hospital smell" odor.
As with other organic compounds, alcohols and phenols...
Alcohols are one of the most important functional groups in organic chemistry. The name of alcohol comes from the hydrocarbon from which it is derived. Alcohols are organic molecules containing the functional hydroxyl or –OH group directly bonded to carbon. Phenols have an OH group directly attached to a benzene ring. While alcohols are colorless, phenol is a white crystalline compound with a characteristic "hospital smell" odor.
As with other organic compounds, alcohols and phenols...
Predicting Molecular Geometry
VSEPR Theory for Determination of Electron Pair Geometries
Phosphoinositides and PIPs
Phosphoinositides are a group of phospholipids containing a glycerol backbone with two fatty acid chains and a phosphate attached to a myoinositol sugar ring. The inositol head group extends into the cytoplasm, where it is modified by adding phosphate groups to form phosphatidylinositol phosphates or PIPs.
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...
