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Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
A copy number variation morbidity map of developmental delay
Gregory M Cooper1, Bradley P Coe, Santhosh Girirajan
1Department of Genome Sciences, University of Washington, Seattle, Washington, USA.
Nature Genetics
|August 16, 2011
Summary
Large copy number variants (CNVs) cause about 14.2% of developmental delay and congenital defects in children. This study identified new pathogenic CNVs and genes, improving genetic diagnosis for developmental disorders.
Area of Science:
- Genetics
- Developmental Biology
- Medical Genomics
Background:
- Developmental delay and congenital defects have complex genetic underpinnings.
- Copy number variants (CNVs) are significant contributors to neurodevelopmental disorders.
Purpose of the Study:
- To investigate the role of CNVs in the genetic heterogeneity of developmental delay and congenital defects.
- To identify pathogenic CNVs and candidate dosage-sensitive genes associated with these conditions.
Main Methods:
- Comparative analysis of CNVs in a large cohort of affected children and unaffected controls.
- Utilized diagnostic array data to discover small, disruptive CNVs.
- Refined critical intervals for known genomic disorders.
Main Results:
- Estimated that CNVs >400 kb account for approximately 14.2% of disease burden.
- Observed higher CNV enrichment in individuals with craniofacial and cardiovascular defects.
- Identified 59 pathogenic CNVs (14 novel/weakly supported) and 940 candidate dosage-sensitive genes.
Conclusions:
- CNVs are a major cause of developmental delay and congenital defects.
- The findings contribute to an evolving CNV morbidity map crucial for genetic diagnosis.
- Integration with sequencing data will enhance understanding of neurodevelopmental disorders.
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