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Updated: May 30, 2026

Spatial and Temporal Analysis of Active ERK in the C. elegans Germline
Published on: November 29, 2016
Importance of domain closure for the autoactivation of ERK2
Daniel Barr1, Taiji Oashi, Kimberly Burkhard
1Department of Chemistry and Biochemistry, Center for Biological Physics, Arizona State University, P.O. Box 871604, Tempe, Arizona 85287, USA.
Abstract:
Extracellular signal-regulated kinases 1 and 2 (ERK1 and -2, respectively) play a critical role in regulating cell division and have been implicated in cancer. In addition to activation by MAPK/ERK kinases 1 and 2 (MEK1 and -2, respectively), certain mutants of ERK2 can be activated by autophosphorylation. To identify the mechanism of autoactivation, we have performed a series of molecular dynamics simulations of ERK1 and -2 in various stages of activation as well as the constitutively active Q103A, I84A, L73P, and R65S ERK2 mutants. Our simulations indicate the importance of domain closure for autoactivation and activity regulation, with that event occurring prior to folding of the activation lip and of loop L16. Results indicate that the second phosphorylation event, that of T183, disrupts hydrogen bonding involving D334, thereby allowing the kinase to lock into the active conformation. On the basis of the simulations, three predictions were made. G83A was suggested to impede activation; K162M was suggested to perturb the interface between the N- and C-domains leading to activation, and Q64C was hypothesized to stop folding of loop L16, thereby perturbing the homodimerization interface. Functional analysis of the mutants validated the predictions concerning the G83A and Q64C mutants. The K162M mutant did not autoactivate as predicted, however, which may be due to the location of the residue on the protein surface near the ED substrate docking domain.
Insights
Extracellular signal-regulated kinases (ERK1/2) are crucial for cell division and cancer. Molecular dynamics simulations reveal domain closure is key to ERK2 autoactivation, with phosphorylation stabilizing the active state.
Area of Science:
- Molecular Biology
- Biochemistry
- Cell Signaling
Background:
- Extracellular signal-regulated kinases 1 and 2 (ERK1/2) are vital regulators of cell division and are implicated in cancer development.
- ERK1/2 activation typically occurs via MAPK/ERK kinases (MEK1/2), but certain ERK2 mutants can autoactivate.
Purpose of the Study:
- To elucidate the molecular mechanism underlying ERK2 autoactivation.
- To investigate the role of specific mutations in ERK2 autoactivation using computational simulations.
Main Methods:
- Utilized molecular dynamics simulations to study ERK1 and ERK2 in various activation states.
- Simulated constitutively active ERK2 mutants (Q103A, I84A, L73P, R65S) to understand autoactivation pathways.
- Performed functional analysis of engineered mutants (G83A, K162M, Q64C) to validate simulation predictions.
Main Results:
- Simulations highlighted the critical role of domain closure in ERK2 autoactivation and activity regulation, preceding activation lip and L16 loop folding.
- The second phosphorylation event (T183) was shown to disrupt hydrogen bonding (D334), enabling the kinase to adopt an active conformation.
- Mutant analysis validated predictions for G83A (impeded activation) and Q64C (perturbed homodimerization), but not K162M (unexpected lack of autoactivation).
Conclusions:
- Domain closure is a critical regulatory step for ERK autoactivation and kinase activity.
- Specific phosphorylation events and residue interactions dictate the transition to and stabilization of the active kinase conformation.
- Molecular dynamics simulations provide valuable insights into kinase autoactivation mechanisms, with experimental validation confirming key predictions.
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