Related Experiment Video
Updated: May 30, 2026

Determination of Protein-ligand Interactions Using Differential Scanning Fluorimetry
Published on: September 13, 2014
Does DFT-D estimate accurate energies for the binding of ligands to metal complexes?
Ulf Ryde1, Ricardo A Mata, Stefan Grimme
1Department of Theoretical Chemistry, Lund University, Chemical Centre, P. O. Box 124, SE-221 00, Lund, Sweden. Ulf.Ryde@teokem.lu.se
Abstract:
We have studied the homolytic dissociation of a methyl radical from a model of methyl cobalamin. For this reaction, density functional theory with an atom-pairwise dispersion correction (DFT-D) gives a dispersion contribution to the bond dissociation energy (BDE) of 22-51 kJ mol(-1) depending on the functional, i.e. much more than common estimates for the total dispersion interaction energy of the methyl group in typical solvents. We show that this large energy correction results from many rather small (0-2 kJ mol(-1)) interactions that arise between the ligand and the metal and the other ligands when a short metal-ligand bond is formed. The energy terms result mostly from atom pairs connected by two or three bonds, i.e. terms that normally are ignored or scaled down at the molecular mechanics level, and have large contributions from r(-8) terms. The added dispersion energy diminishes the variation in the calculated BDE observed among various generalised-gradient approximation (GGA) functionals, whereas a gap still persists between the results of GGA and hybrid functionals. Model calculations at the local MP2 and CCSD (second-order perturbation theory and coupled cluster theory with single and double excitations) levels are in a similar range as the dispersion interactions estimated by DFT-D (23-29 kJ mol(-1)). However, both the DFT-D and the wavefunction-based results include middle-range correlation effects that vary greatly between different DFT methods owing to their different density-based description in the short-range regime. Therefore, it is not meaningful to discuss which DFT method gives the most accurate estimate of the dispersion contribution to the BDE. Moreover, for a balanced treatment of dispersion during the binding reaction in solution, the dispersion energy of the ligand and the unbound complex with the surroundings needs also to be considered, which decreases the net dispersion contribution to binding by ~20 kJ mol(-1).
More Related Videos
11:38Quantifying the Binding Interactions Between Cu(II) and Peptide Residues in the Presence and Absence of Chromophores
Published on: April 5, 2022
11:04Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
Published on: September 7, 2019
Related Concept Videos
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
The Equilibrium Binding Constant and Binding Strength
The Equilibrium Binding Constant and Binding Strength
Crystal Field Theory - Tetrahedral and Square Planar Complexes
Crystal field theory (CFT) is applicable to molecules in geometries other than octahedral. In octahedral complexes, the lobes of the dx2−y2 and dz2 orbitals point directly at the ligands. For tetrahedral complexes, the d orbitals remain in place, but with only four ligands located between the axes. None of the orbitals points directly at the tetrahedral ligands. However, the dx2−y2 and dz2 orbitals (along the Cartesian axes) overlap with the ligands less than the dxy,...
Complexometric Titration: Ligands
Valence Bond Theory