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Mechanisms of resistance to decitabine in the myelodysplastic syndrome
Taichun Qin1, Ryan Castoro, Samih El Ahdab
1Department of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Purpose:
The DNA methylation inhibitor 5-aza-2'-deoxycytidine (DAC) is approved for the treatment of myelodysplastic syndromes (MDS), but resistance to DAC develops during treatment and mechanisms of resistance remain unknown. Therefore, we investigated mechanisms of primary and secondary resistance to DAC in MDS.
Patients And Methods:
We performed Quantitative Real-Time PCR to examine expression of genes related to DAC metabolism prior to therapy in 32 responders and non-responders with MDS as well as 14 patients who achieved a complete remission and subsequently relapsed while on therapy (secondary resistance). We then performed quantitative methylation analyses by bisulfite pyrosequencing of 10 genes as well as Methylated CpG Island Amplification Microarray (MCAM) analysis of global methylation in secondary resistance.
Results:
Most genes showed no differences by response, but the CDA/DCK ratio was 3 fold higher in non-responders than responders (P<.05), suggesting that this could be a mechanism of primary resistance. There were no significant differences at relapse in DAC metabolism genes, and no DCK mutations were detected. Global methylation measured by the LINE1 assay was lower at relapse than at diagnosis (P<.05). On average, the methylation of 10 genes was lower at relapse (16.1%) compared to diagnosis (18.1%) (P<.05). MCAM analysis showed decreased methylation of an average of 4.5% (range 0.6%-9.7%) of the genes at relapse. By contrast, new cytogenetic changes were found in 20% of patients.
Conclusion:
Pharmacological mechanisms are involved in primary resistance to DAC, whereas hypomethylation does not prevent a relapse for patients with DAC treatment.
Insights
Primary resistance to 5-aza-2'-deoxycytidine (DAC) in myelodysplastic syndromes (MDS) involves pharmacological mechanisms. Hypomethylation does not prevent relapse in patients undergoing DAC treatment.
Area of Science:
- Hematology
- Cancer Biology
- Epigenetics
Background:
- 5-aza-2'-deoxycytidine (DAC) is a DNA methylation inhibitor used to treat myelodysplastic syndromes (MDS).
- Acquired resistance to DAC limits its therapeutic efficacy in MDS.
- Mechanisms underlying primary and secondary DAC resistance in MDS are not fully understood.
Purpose of the Study:
- To investigate the mechanisms of primary and secondary resistance to DAC in patients with MDS.
- To identify potential biomarkers for predicting DAC response and resistance.
Main Methods:
- Quantitative Real-Time PCR was used to analyze DAC metabolism gene expression in MDS patients.
- Bisulfite pyrosequencing and Methylated CpG Island Amplification Microarray (MCAM) were employed for quantitative methylation analysis.
- Analysis included 32 responders and non-responders, and 14 patients with secondary resistance.
Main Results:
- A higher cytidine deaminase/deoxycytidine kinase (CDA/DCK) ratio was observed in primary non-responders, suggesting a role in primary resistance.
- No significant differences in DAC metabolism genes or DCK mutations were found at relapse.
- Global hypomethylation was observed at relapse compared to diagnosis, with decreased methylation in specific genes.
Conclusions:
- Pharmacological mechanisms, such as altered gene expression related to DAC metabolism, contribute to primary resistance.
- While global hypomethylation occurs during DAC treatment, it does not appear to prevent relapse in MDS patients.
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