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Immunofluorescence Imaging of DNA Damage and Repair Foci in Human Colon Cancer Cells
Published on: June 9, 2020
Is there evidence of involvement of DNA repair polymorphisms in human cancer?
Fulvio Ricceri1, Giuseppe Matullo, Paolo Vineis
1Human Genetics Foundation, Torino, Italy.
Abstract:
DNA suffers from a wide range of damage, both from extracellular agents and via endogenous mechanisms. Damage of DNA can lead to cancer and other diseases. Therefore, it is plausible that sequence variants in DNA repair genes are involved in cancer development. A recent systematic review and meta-analysis, based on the "Venice criteria", showed that out of 241 associations investigated, only three resulted to have a strong grade of cumulative evidence. These associations were: two SNPs rs1799793 and rs13181 in the ERCC2 gene and lung cancer (recessive model) and rs1805794 in the NBN gene and bladder cancer (dominant model). An update of this meta-analysis has been performed in the present paper, and we found partially inconsistent results. Inconsistencies in the literature are thus far not easy to explain. In addition, none of the cancer genome-wide association studies (GWAs) published so far showed highly statistically significant associations for any of the common DNA repair gene variants, in such a way as to place DNA repair genes among the top 10-20 hits identified in GWAs. Though this suggests that it is unlikely that DNA repair gene polymorphisms per se play a major role, a clarification of the discrepancies in the literature is needed. Also, gene/environment and gene/lifestyle interactions for the carcinogenic mechanisms involving DNA repair should be investigated more systematically and with less classification error. Finally, the combined effect of multiple SNPs in several genes in one or more relevant DNA repair pathways could have a greater impact on pathological phenotypes than SNPs in single genes, but this has been investigated only occasionally.
Insights
DNA repair gene variants are linked to cancer, but evidence is inconsistent. Further research is needed to clarify discrepancies and explore gene interactions in cancer development.
Area of Science:
- Genetics
- Cancer Biology
- Molecular Epidemiology
Background:
- DNA damage from endogenous and exogenous sources can lead to cancer.
- Sequence variants in DNA repair genes are hypothesized to influence cancer development.
- Previous meta-analyses show limited strong evidence for specific DNA repair gene variants and cancer risk.
Purpose of the Study:
- To update a meta-analysis on DNA repair gene variants and cancer associations.
- To address inconsistencies in the existing literature.
- To highlight the need for further investigation into gene-environment interactions and combined SNP effects.
Main Methods:
- Systematic review and meta-analysis of published studies.
- Inclusion of updated data and re-evaluation of evidence.
- Analysis of single nucleotide polymorphisms (SNPs) in DNA repair genes.
Main Results:
- Updated meta-analysis revealed partially inconsistent results compared to previous findings.
- No common DNA repair gene variants showed highly significant associations in cancer genome-wide association studies (GWAS).
- Existing evidence suggests polymorphisms in single DNA repair genes may not play a major role alone.
Conclusions:
- Discrepancies in the literature regarding DNA repair genes and cancer require clarification.
- Gene-environment and gene-lifestyle interactions warrant more systematic investigation.
- The combined effects of multiple SNPs across DNA repair pathways may be more impactful than single SNPs.
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