Related Experiment Video
Updated: May 29, 2026

A Nonsequencing Approach for the Rapid Detection of RNA Editing
Published on: April 21, 2022
Recognition of noisy subsequences using constrained edit distances
1School of Computer Science, Carleton University, Ottawa, Ont. KIS 5B6, Canada.
Abstract:
Let X* be any unknown word from a finite dictionary H. Let U be any arbitrary subsequence of X*. We consider the problem of estimating X* by processing Y, which is a noisy version of U. We do this by defining the constrained edit distance between XH and Y subject to any arbitrary edit constraint involving the number and type of edit operations to be performed. An algorithm to compute this constrained edit distance has been presented. Although in general the algorithm has a cubic time complexity, within the framework of our solution the algorithm possesses a quadratic time complexity. Recognition using the constrained edit distance as a criterion demonstrates remarkable accuracy. Experimental results which involve strings of lengths between 40 and 80 and which contain an average of 26.547 errors per string demonstrate that the scheme has about 99.5 percent accuracy.
Related Concept Videos
Multi-species Conserved Sequences
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Maxam-Gilbert Sequencing
Challenges of the Maxam-Gilbert Method
The...
Per-Unit Sequence Models
Zero-sequence currents, which are identical in magnitude and phase, generate a neutral current, resulting in voltage drops across the neutral impedance and the low-voltage winding. If the...
Restriction Enzymes
The host bacteria protect their own genomic DNA from these enzymes by methylating these sites. Some...
Distance Corrections
Distance Problem

