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Updated: May 29, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Impaired nucleotide excision repair pathway as a possible factor in pathogenesis of head and neck cancer
T Sliwinski1, L Markiewicz, P Rusin
1Department of Molecular Genetics, University of Lodz, Lodz, Poland.
Abstract:
Tobacco smoking is one of the major risk factors in pathogenesis of head and neck squamous cell carcinomas (HNSCC). Many of the chemical compounds present in tobacco are well-known carcinogens which form adducts with DNA. Cells remove these adducts mainly by the nucleotide excision repair pathway (NER). NER also eliminates a broad spectrum of pyrimidine dimers (CPD) and photo-products (6-4PP) induced by UV-radiation or DNA cross-links after cisplatin anti-cancer treatment. In this study DNA damage and repair was examined in peripheral blood lymphocytes obtained from 20 HNSCC patients and 20 healthy controls as well as HTB-43 larynx and SSC-25 tongue cancer cell lines. DNA repair kinetics in the examined cells after cisplatin or UV-radiation treatment were investigated using alkaline comet assay during 240min of post-treatment incubation. MTT assay was used to analyse cell viability and the Annexin V-FITC kit specific for kinase-3 was employed to determine apoptosis after treating the cells with UV-radiation at dose range from 0.5 to 60J/m(2). NER capability was assessed in vitro with cell extracts by the use of a bacterial plasmid irradiated with UV-light as a substrate for the repair. The results show that lymphocytes from HNSCC patients and HTB-43 or SSC-25 cancer cells were more sensitive to genotoxic treatment with UV-radiation and displayed impaired DNA repair. Also evidenced was a higher rate of apoptosis induction after UV-radiation treatment of lymphocytes from the HNSCC patients and the HTB-43 cancer cells than after treatment of those from healthy donors. Finally, our results showed that there was a significant decrease in NER capacity in HTB-43 or SSC-25 cancer cells as well as in peripheral blood lymphocytes of HNSCC patients compared to controls. In conclusion, we suggest that the impaired NER pathway might be a critical factor in pathogenesis of head and neck cancer.
Insights
Impaired nucleotide excision repair (NER) in head and neck squamous cell carcinoma (HNSCC) patients
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Tobacco smoking is a primary risk factor for head and neck squamous cell carcinomas (HNSCC).
- Carcinogens in tobacco form DNA adducts, which are primarily repaired by the nucleotide excision repair (NER) pathway.
- NER also repairs UV-induced DNA damage and cisplatin-induced cross-links.
Purpose of the Study:
- To investigate DNA damage and repair mechanisms in HNSCC patients and cancer cell lines.
- To compare the DNA repair capacity of HNSCC patients' lymphocytes and cancer cells with healthy controls.
- To assess the role of the NER pathway in HNSCC pathogenesis.
Main Methods:
- Alkaline comet assay to measure DNA repair kinetics after UV or cisplatin treatment.
- MTT assay for cell viability analysis.
- Annexin V-FITC kit to determine apoptosis.
- In vitro assessment of NER capacity using UV-irradiated plasmid DNA.
Main Results:
- Lymphocytes from HNSCC patients and HNSCC cell lines (HTB-43, SSC-25) showed increased sensitivity to UV radiation and impaired DNA repair.
- HNSCC patients' lymphocytes and HTB-43 cells exhibited higher apoptosis rates after UV treatment compared to healthy controls.
- A significant reduction in NER capacity was observed in HNSCC patients' lymphocytes and cancer cell lines.
Conclusions:
- Impaired nucleotide excision repair (NER) pathway function is linked to head and neck squamous cell carcinoma (HNSCC) development.
- Reduced NER capacity may be a critical factor in the pathogenesis of HNSCC.
- These findings highlight the importance of NER in protecting against HNSCC.
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