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Updated: May 29, 2026

Investigating Flagella-Driven Motility in Escherichia coli by Applying Three Established Techniques in a Series
Published on: May 10, 2020
CsrA-FliW interaction governs flagellin homeostasis and a checkpoint on flagellar morphogenesis in Bacillus subtilis
Sampriti Mukherjee1, Helen Yakhnin, Dave Kysela
1Department of Biology, Indiana University, Bloomington, IN 47408, USA.
Abstract:
CsrA is a widely distributed RNA binding protein that regulates translation initiation and/or mRNA stability of target transcripts. CsrA activity is antagonized by sRNA(s) containing multiple CsrA binding sites in several Gram-negative bacterial species. Here we discover FliW, the first protein antagonist of CsrA activity that constitutes a partner switching mechanism to control flagellin synthesis in the Gram-positive organism Bacillus subtilis. Following the flagellar assembly checkpoint of hook completion, secretion of flagellin (Hag) releases FliW protein from a FliW-Hag complex. FliW then binds to CsrA and relieves CsrA-mediated translational repression of hag for flagellin synthesis concurrent with filament assembly. Thus, flagellin homeostatically restricts its own translation. Homeostatic autoregulation may be a general mechanism to precisely control structural subunits required at specific times and in finite amounts such as those involved in the assembly of flagella, type III secretion machines and pili. Finally, phylogenetic analysis suggests that CsrA, a highly pleiotropic virulence regulator in many bacterial pathogens, had an ancestral role in flagellar assembly and evolved to co-regulate various cellular processes with motility.
Insights
Researchers discovered FliW, a protein that acts as an antagonist to CsrA, controlling flagellin synthesis in Bacillus subtilis through a novel partner-switching mechanism for precise bacterial motility regulation.
Area of Science:
- Microbiology
- Molecular Biology
- Bacterial Genetics
Background:
- CsrA is a conserved RNA-binding protein regulating gene expression in bacteria.
- In Gram-negative bacteria, CsrA activity is typically antagonized by small RNAs (sRNAs).
- A protein-based antagonist for CsrA has not been previously identified.
Purpose of the Study:
- To identify and characterize novel regulators of CsrA activity.
- To elucidate the mechanism controlling flagellin synthesis in Bacillus subtilis.
- To investigate the role of protein-protein interactions in post-transcriptional gene regulation.
Main Methods:
- Protein-protein interaction studies to identify FliW as a CsrA binder.
- Genetic analysis in Bacillus subtilis to assess the function of FliW and CsrA in flagellin regulation.
- Biochemical assays to confirm CsrA binding and activity modulation by FliW.
Main Results:
- FliW is identified as the first protein antagonist of CsrA activity.
- FliW acts via a partner-switching mechanism, releasing CsrA-mediated repression of flagellin (Hag) synthesis.
- This regulation occurs post-hook completion, linking flagellar assembly to flagellin production.
- Flagellin synthesis is homeostatically autoregulated by this FliW-CsrA interaction.
Conclusions:
- FliW-mediated antagonism of CsrA provides a novel mechanism for controlling gene expression.
- Homeostatic autoregulation of structural subunits is a potentially widespread mechanism in bacteria.
- CsrA's ancestral role in flagellar assembly suggests its evolution towards broader regulatory functions, including virulence.
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