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Updated: May 29, 2026

Generation of Defined Genomic Modifications Using CRISPR-CAS9 in Human Pluripotent Stem Cells
Published on: September 25, 2019
Concise review: managing genotoxicity in the therapeutic modification of stem cells
Christopher Baum1, Ute Modlich, Gudrun Göhring
1Institute of Experimental Hematology, Hannover Medical School, Hannover, Germany. baum.christopher@mh-hannover.de
Abstract:
The therapeutic use of procedures for genetic stem cell modification is limited by potential adverse events related to uncontrolled mutagenesis. Prominent findings have been made in hematopoietic gene therapy, demonstrating the risk of clonal, potentially malignant outgrowth on the basis of mutations acquired during or after therapeutic genome modification. The incidence and the growth rate of insertional mutants have been linked to the "stemness" of the target cells and vector-related features such as the integration pattern, the architecture, and the exact content of transgene cassettes. Milieu factors supporting the survival and expansion of mutants may eventually allow oncogenic progression. Similar concerns apply for medicinal products based on pluripotent stem cells. Focusing on the genetic stress induced by insertional mutagenesis and culture adaptation, we propose four conclusions. (a) Mutations occurring in the production of stem cell-based medicines may be unavoidable and need to be classified according to their risk to trigger the formation of clones that are sufficiently long-lived and mitotically active to acquire secondary transforming mutations. (b) The development of rational prevention strategies depends upon the identification of the specific mutations forming such "dominant clones" (which can also be addressed as cancer stem cell precursors) and a better knowledge of the mechanisms underlying their creation, expansion, and homeostatic control. (c) Quantitative assay systems are required to assess the practical value of preventive actions. (d) Improved approaches for the genetic modification of stem cells can address all critical steps in the origin and growth control of mutants.
Insights
Genetic stem cell modification carries risks of dangerous mutations. Strategies are needed to identify, prevent, and quantify these mutations for safer gene therapies.
Area of Science:
- Biotechnology
- Molecular Biology
- Cancer Research
Background:
- Therapeutic genetic stem cell modification is limited by uncontrolled mutagenesis.
- Hematopoietic gene therapy shows risks of clonal, malignant outgrowth from acquired mutations.
- Concerns extend to pluripotent stem cell-based medicinal products.
Purpose of the Study:
- To address genetic stress from insertional mutagenesis and culture adaptation in stem cell therapies.
- To propose conclusions regarding mutation classification, prevention, and assessment.
- To improve genetic modification approaches for stem cell-based medicines.
Main Methods:
- Focus on genetic stress induced by insertional mutagenesis and culture adaptation.
- Analysis of factors influencing mutant clone survival and expansion.
- Proposal of classification and prevention strategies for mutations.
Main Results:
- Mutations during stem cell medicine production may be unavoidable and require risk classification.
- Identification of specific mutations forming dominant clones (cancer stem cell precursors) is crucial.
- Quantitative assay systems are necessary to evaluate preventive actions.
Conclusions:
- Mutations in stem cell therapies need classification based on their potential for oncogenic progression.
- Understanding mutation mechanisms and identifying dominant clones are key for prevention.
- Improved genetic modification techniques can mitigate risks associated with stem cell mutations.
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