A common SNP in the CD40 region is associated with systemic lupus erythematosus and correlates with altered CD40

Vassilios M Vazgiourakis1, Maria I Zervou, Christianna Choulaki

  • 1Laboratory of Molecular Medicine and Human Genetics, Department of Medicine, University of Crete, Heraklion, Greece.

Insights

The CD40 rs4810485 single nucleotide polymorphism (SNP) is linked to a reduced risk of systemic lupus erythematosus (SLE). This SNP is associated with lower CD40 expression in immune cells, potentially impacting disease regulation.

Area of Science:

  • Immunology
  • Genetics
  • Rheumatology

Background:

  • Systemic lupus erythematosus (SLE) pathogenesis involves CD40L-CD40 interactions.
  • CD40 is a known rheumatoid arthritis susceptibility gene, but its role in SLE was unclear.

Purpose of the Study:

  • To investigate the association between the CD40 rs4810485 single nucleotide polymorphism (SNP) and SLE risk.
  • To assess the impact of this SNP on CD40 expression levels.

Main Methods:

  • Genotyping of the CD40 rs4810485 SNP in Greek and Turkish cohorts.
  • Analysis of CD40 mRNA and protein expression in peripheral blood mononuclear cells using qPCR and flow cytometry.

Main Results:

  • The minor allele T of rs4810485 was significantly under-represented in SLE patients from both cohorts.
  • Meta-analysis confirmed the protective association of the T allele against SLE (OR=0.63, p=2x10(-8)).
  • rs4810485 genotypes (G/T, T/T) correlated with reduced CD40 expression in monocytes and B cells.

Conclusions:

  • CD40 rs4810485 is a novel susceptibility locus for SLE in Greek and Turkish populations.
  • The minor allele T confers protection against SLE and is associated with decreased CD40 expression.
  • This finding suggests a role for CD40 in regulating aberrant immune responses in SLE.
Abstract

Related Concept Videos

Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Pharmacogenomics: Identification of New Drug Targets01:29

Pharmacogenomics: Identification of New Drug Targets

Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...
Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Comparing Copy Number Variations and SNPs02:26

Comparing Copy Number Variations and SNPs

Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Pleiotropy01:33

Pleiotropy

Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...