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Updated: May 29, 2026

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Chromatin Isolation by RNA Purification (ChIRP)
Published on: March 25, 2012
Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs
1Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro Cho, Tsurumi Ku, Yokohama, Kanagawa 230-0045, Japan.
Summary
Long non-coding RNAs (lncRNAs) use common molecular mechanisms for gene repression, including chromatin remodeling and controlling gene entry into silent compartments. These findings offer insights into transcription regulation and potential therapeutic strategies.
Area of Science:
- Molecular Biology
- Epigenetics
- Gene Regulation
Background:
- Long non-coding RNAs (lncRNAs) are increasingly recognized for their roles in gene regulation.
- Understanding the precise mechanisms of lncRNA-mediated gene silencing is crucial for deciphering cellular processes.
Purpose of the Study:
- To identify and discuss common molecular mechanisms underlying lncRNA-mediated gene repression.
- To explore potential therapeutic applications of lncRNA-targeted gene silencing.
- To propose future research directions and technological advancements in the field.
Main Methods:
- Review and synthesis of current literature on lncRNA function in gene repression.
- Comparative analysis of identified lncRNA-mediated silencing pathways.
- Conceptualization of gene exit mechanisms from silencing domains.
Main Results:
- Emerging common themes in lncRNA-mediated gene repression, including chromatin remodeling and nuclear organization.
- lncRNAs precisely control gene entry into and exit from transcriptionally silent compartments.
- Identification of fundamental transcription regulation processes governed by lncRNAs.
Conclusions:
- The identified common mechanisms represent fundamental principles of lncRNA-governed transcription regulation.
- Further investigation into lncRNAs and chromatin remodeling enzymes is warranted.
- Potential therapeutic strategies targeting lncRNA functions are emerging.
Related Concept Videos
lncRNA - Long Non-coding RNAs
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA (lncRNA)...
lncRNA - Long Non-coding RNAs
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA (lncRNA)...
Types of RNA
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
RNA Performs Diverse...
Types of RNA
Overview
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in the regulation of gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA...
Epigenetic Regulation
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...
Epigenetic Regulation
Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.

