Related Experiment Video
Updated: May 29, 2026

Method for Measuring the Activity of Deubiquitinating Enzymes in Cell Lines and Tissue Samples
Published on: May 10, 2015
USP1 deubiquitinates ID proteins to preserve a mesenchymal stem cell program in osteosarcoma
Samuel A Williams1, Heather L Maecker, Dorothy M French
1Department of Physiological Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080, USA.
Abstract:
Inhibitors of DNA binding (IDs) antagonize basic-helix-loop-helix (bHLH) transcription factors to inhibit differentiation and maintain stem cell fate. ID ubiquitination and proteasomal degradation occur in differentiated tissues, but IDs in many neoplasms appear to escape degradation. We show that the deubiquitinating enzyme USP1 promotes ID protein stability and stem cell-like characteristics in osteosarcoma. USP1 bound, deubiquitinated, and thereby stabilized ID1, ID2, and ID3. A subset of primary human osteosarcomas coordinately overexpressed USP1 and ID proteins. USP1 knockdown in osteosarcoma cells precipitated ID protein destabilization, cell-cycle arrest, and osteogenic differentiation. Conversely, ectopic USP1 expression in mesenchymal stem cells stabilized ID proteins, inhibited osteoblastic differentiation, and enhanced proliferation. Consistent with USP1 functioning in normal mesenchymal stem cells, USP1-deficient mice were osteopenic. Our observations implicate USP1 in preservation of the stem cell state that characterizes osteosarcoma and identify USP1 as a target for differentiation therapy.
Insights
The deubiquitinating enzyme USP1 stabilizes Inhibitors of DNA binding (ID) proteins, maintaining stem cell characteristics in osteosarcoma. Targeting USP1 could offer a new therapeutic strategy for osteosarcoma differentiation therapy.
Area of Science:
- Molecular Biology
- Cancer Biology
- Stem Cell Biology
Background:
- Inhibitors of DNA binding (ID) proteins are crucial for maintaining stem cell fate by inhibiting differentiation.
- While ID proteins are typically degraded in differentiated tissues, they often persist in neoplasms.
- The mechanisms regulating ID protein stability in cancer remain incompletely understood.
Purpose of the Study:
- To investigate the role of the deubiquitinating enzyme USP1 in regulating ID protein stability.
- To determine USP1's contribution to stem cell-like characteristics in osteosarcoma.
- To explore USP1 as a potential therapeutic target for osteosarcoma.
Main Methods:
- Immunoprecipitation and Western blotting to assess USP1-ID protein interactions and ubiquitination status.
- USP1 knockdown and overexpression experiments in osteosarcoma and mesenchymal stem cells.
- Assessment of cell proliferation, cell-cycle arrest, and osteogenic differentiation markers.
- Analysis of USP1 and ID protein expression in primary human osteosarcoma samples.
- Phenotypic analysis of USP1-deficient mice.
Main Results:
- USP1 directly binds to and deubiquitinates ID1, ID2, and ID3, thereby stabilizing these proteins.
- Co-overexpression of USP1 and ID proteins was observed in a subset of human osteosarcomas.
- USP1 knockdown in osteosarcoma cells led to ID protein destabilization, cell-cycle arrest, and induced osteogenic differentiation.
- Ectopic USP1 expression in mesenchymal stem cells promoted proliferation and inhibited osteoblastic differentiation.
- USP1 deficiency in mice resulted in osteopenia, indicating its role in bone homeostasis.
Conclusions:
- USP1 plays a critical role in stabilizing ID proteins, promoting stem cell-like properties in osteosarcoma.
- USP1 is implicated in preserving the stem cell state characteristic of osteosarcoma.
- USP1 represents a promising therapeutic target for inducing differentiation in osteosarcoma.
Related Concept Videos
Abnormal Proliferation
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Mesenchymal Stem Cells
Covalently Linked Protein Regulators
These groups modify specific amino acids in a protein.
