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Updated: May 29, 2026

Generation of In-Frame Gene Deletion Mutants in Pseudomonas aeruginosa and Testing for Virulence Attenuation in a Simple Mouse Model of Infection
Published on: January 8, 2020
Pseudomonas aeruginosa Cif defines a distinct class of α/β epoxide hydrolases utilizing a His/Tyr ring-opening pair
Christopher D Bahl1, Dean R Madden
1Dept. of Biochemistry, Dartmouth Medical School, 7200 Vail Building Hanover, NH 03755, USA. drm0001@dartmouth.edu
Abstract:
The Gram-negative bacterium Pseudomonas aeruginosa is an opportunistic pathogen that secretes a multitude of virulence factors during the course of infection. Among these is Cif, an epoxide hydrolase (EH) that reduces the functional localization of the cystic fibrosis transmembrane conductance regulator in epithelial cells. In addition to being the first reported EH virulence factor, Cif possesses unique sequence deviations from canonical EH motifs. Foremost among these is the substitution of a histidine for the first epoxide ring-opening tyrosine in the active site. To test the functional equivalence of Tyr and His side chains at this position, we have generated the mutant Cif-H177Y. Structural analysis confirms that both the WT His and mutant Tyr side chains can be accommodated without large-scale conformational changes. However, the Tyr mutant is functionally inactive. Based on a detailed analysis of the structure of the Tyr mutant, it appears that Cif's main-chain conformation imposes a functional requirement for a His at this position. Comparison with canonical EH structures reveals additional conformational differences, which are coupled to divergent sequence characteristics. When used to probe the genomes of other opportunistic pathogens, these sequence-structure criteria uncover candidate sequences that appear to form a distinct subfamily of Cif-like epoxide hydrolases characterized by a conserved His/Tyr ring-opening pair.
Insights
Pseudomonas aeruginosa virulence factor Cif, an epoxide hydrolase, requires a specific histidine for function. Mutational analysis revealed that substituting tyrosine inactivates the enzyme, highlighting unique structural requirements for Cif-like hydrolases.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Pseudomonas aeruginosa is an opportunistic pathogen.
- Cif is an epoxide hydrolase (EH) virulence factor secreted by P. aeruginosa.
- Cif affects cystic fibrosis transmembrane conductance regulator localization.
Purpose of the Study:
- To investigate the functional role of active site residues in Cif.
- To determine the structural and functional consequences of substituting the catalytic tyrosine with histidine.
- To identify potential Cif-like epoxide hydrolases in other pathogens.
Main Methods:
- Site-directed mutagenesis to create Cif-H177Y mutant.
- Structural analysis of the wild-type and mutant enzymes.
- Bioinformatic analysis of pathogen genomes.
Main Results:
- The Cif-H177Y mutant was functionally inactive.
- Structural analysis showed that while both histidine and tyrosine fit the active site, the enzyme's conformation necessitates histidine.
- Sequence and structure criteria identified a distinct subfamily of Cif-like EHs.
Conclusions:
- The active site histidine is essential for Cif epoxide hydrolase activity.
- Cif possesses unique structural features distinguishing it from canonical EHs.
- A conserved His/Tyr pair characterizes a novel subfamily of Cif-like epoxide hydrolases.
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