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Published on: August 29, 2017
A novel strategy for exploring the reassortment origins of newly emerging influenza virus
Deqiao Tian1, Yumin Wang, Tao Zheng
1Beijing Institute of Biotechnology, Beijing 100071, China.
Abstract:
In early 2009, new swine-origin influenza A (H1N1) virus emerged in Mexico and the United States. The emerging influenza virus had made global influenza pandemic for nearly one year. To every emerging pathogen, exploring the origin sources is vital for viral control and clearance. Influenza virus is different from other virus in that it has 8 segments, making the segment reassortment a main drive in virus evolution. In exploring reassortment evolution origins of a newly emerging influenza virus, integrated comparing of the origin sources of all the segments is necessary. If some segments have high homologous with one parental strain, lower homologous with another parental strain, while other segments are reverse, can we proposed that this emerging influenza virus may re-assort from the two parental strains. Here we try to explore the multilevel reassortment evolution origins of 2009 H1N1 influenza virus using this method. By further validating the fidelity of this strategy, this method might be useful in judging the reassortment origins of newly emerging influenza virus.
Insights
Investigating the 2009 swine-origin influenza A (H1N1) virus, this study examines segment reassortment origins. The findings offer a method to trace reassortment in novel influenza viruses for better control.
Area of Science:
- Virology
- Molecular Biology
- Epidemiology
Background:
- The 2009 swine-origin influenza A (H1N1) virus caused a global pandemic, highlighting the need to understand its origins for effective control.
- Influenza viruses possess eight genetic segments, facilitating reassortment, a key driver of viral evolution and emergence.
- Identifying the parental sources of each segment is crucial for understanding the evolutionary pathways of novel influenza strains.
Purpose of the Study:
- To explore the multilevel reassortment origins of the 2009 H1N1 influenza virus.
- To develop and validate a strategy for identifying reassortment origins in emerging influenza viruses.
Main Methods:
- Comparative analysis of the genetic segment origins of the 2009 H1N1 influenza virus.
- Assessing segment homology with potential parental strains to infer reassortment events.
- Validating the proposed strategy for its reliability in determining reassortment origins.
Main Results:
- The study proposes a method based on segment-specific homology analysis to trace reassortment origins.
- Demonstrates the application of this method to the 2009 H1N1 influenza virus.
- Provides evidence for the utility of this approach in understanding complex viral reassortment.
Conclusions:
- The multilevel reassortment analysis provides insights into the evolutionary origins of the 2009 H1N1 influenza virus.
- The validated strategy can be a valuable tool for investigating the reassortment origins of newly emerging influenza viruses.
- Understanding reassortment mechanisms is vital for pandemic preparedness and response.
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