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Updated: May 29, 2026
08:01
A Web Tool for Generating High Quality Machine-readable Biological Pathways
Published on: February 8, 2017
Evolution and applications of plant pathway resources and databases
1Iowa State University, USA.
Briefings in Bioinformatics
|September 28, 2011
Summary
Plant pathway databases are crucial for understanding plant systems biology and applications. This review highlights current resources, challenges, and proposes Good Database Practice for better integration and modeling.
Area of Science:
- Plant Biology
- Bioinformatics
- Systems Biology
Background:
- Plants are vital for food, medicine, fuel, and biotechnology.
- Plant biological pathway research and systems biology lag behind human counterparts.
- Database infrastructure for plant model systems requires greater attention.
Purpose of the Study:
- To review available plant pathway databases and resources.
- To identify trends and challenges in integrating plant pathway databases.
- To explore how progress in other fields can improve plant pathway database landscape.
Main Methods:
- Literature review of existing plant pathway databases.
- Analysis of current integration efforts and their applications.
- Benchmarking against non-plant database integration strategies.
Main Results:
- Identified key plant pathway databases and their limitations.
- Outlined significant challenges in data integration and standardization.
- Highlighted potential for quantitative modeling through improved database infrastructure.
Conclusions:
- Enhanced integration of plant pathway databases is essential for advancing plant systems biology.
- Adoption of Good Database Practice can foster collaboration and ease future integration.
- Leveraging progress from non-plant communities offers a roadmap for improvement.
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