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Updated: May 29, 2026

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
[Computer simulation of the transcription process in the discrete model of DNA molecule]
Abstract:
A mathematical model of the nonlinear dynamics of DNA has been considered, which takes into account the real sequence of the nitrous base. Soliton solutions describing the nonlinear mechanisms of the regulation of DNA transcription have been obtained. It has been shown that the soliton-like excitation may both fade in the terminator of the first gene and pass into the promotor of the second gene. Thus, transcription processes in one gene and two consecutive genes are modeled.
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Transcription
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
Transcription
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Bacterial Transcription
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription in Prokaryotes
Transcription Elongation Factors
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA into a...
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However, only 1% of the DNA is composed of genes that encode proteins; the rest, 99% is non-coding DNA. This non-coding DNA performs...

