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Updated: May 28, 2026

Hybrid Ensemble and Single-molecule Assay to Image the Motion of Fully Reconstituted CMG
Published on: July 26, 2024
Molecular architecture of a multifunctional MCM complex
June Sanchez-Berrondo1, Pablo Mesa, Arkaitz Ibarra
1Structural Biology and Biocomputing Programme, Macromolecular Crystallography Group, Spanish National Cancer Research Center (CNIO), c/Melchor Fdez. Almagro 3, 28029-Madrid, Spain.
Abstract:
DNA replication is strictly regulated through a sequence of steps that involve many macromolecular protein complexes. One of them is the replicative helicase, which is required for initiation and elongation phases. A MCM helicase found as a prophage in the genome of Bacillus cereus is fused with a primase domain constituting an integrative arrangement of two essential activities for replication. We have isolated this helicase-primase complex (BcMCM) showing that it can bind DNA and displays not only helicase and primase but also DNA polymerase activity. Using single-particle electron microscopy and 3D reconstruction, we obtained structures of BcMCM using ATPγS or ADP in the absence and presence of DNA. The complex depicts the typical hexameric ring shape. The dissection of the unwinding mechanism using site-directed mutagenesis in the Walker A, Walker B, arginine finger and the helicase channels, suggests that the BcMCM complex unwinds DNA following the extrusion model similarly to the E1 helicase from papillomavirus.
Insights
Researchers isolated a novel Bacillus cereus helicase-primase complex (BcMCM) with DNA binding, helicase, primase, and polymerase activities. Structural analysis revealed a hexameric ring shape, suggesting a DNA unwinding mechanism similar to papillomavirus E1 helicase.
Area of Science:
- Molecular Biology
- Structural Biology
- Biochemistry
Background:
- DNA replication relies on regulated protein complexes, including replicative helicases.
- Bacillus cereus harbors a prophage-encoded MCM helicase fused with a primase domain.
Purpose of the Study:
- To isolate and characterize the Bacillus cereus helicase-primase complex (BcMCM).
- To elucidate the structural and mechanistic properties of BcMCM, including its DNA binding and enzymatic activities.
Main Methods:
- Isolation and purification of the BcMCM complex.
- Biochemical assays to determine helicase, primase, and DNA polymerase activities.
- Single-particle electron microscopy and 3D reconstruction to determine complex structure.
- Site-directed mutagenesis to investigate the DNA unwinding mechanism.
Main Results:
- The isolated BcMCM complex exhibits DNA binding, helicase, primase, and DNA polymerase activities.
- Structural analysis revealed a hexameric ring structure typical of MCM helicases.
- Mutagenesis studies suggest BcMCM unwinds DNA via an extrusion model, akin to papillomavirus E1 helicase.
Conclusions:
- The BcMCM complex represents an integrated helicase-primase system with multiple enzymatic functions.
- Its hexameric structure and proposed unwinding mechanism provide insights into DNA replication machinery.
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