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Related Concept Videos

Protein Networks02:26

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Protein Networks02:26

Protein Networks

An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Synthetic Biology02:55

Synthetic Biology

Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
Molecular Models02:00

Molecular Models

Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
Interactions Between Signaling Pathways01:19

Interactions Between Signaling Pathways

Signaling cascades usually lack linearity. Multiple pathways interact and regulate one another, allowing cells to integrate and respond to diverse environmental stimuli.
Convergence and divergence, and cross-talk between signaling pathways
Two distinct signaling pathways can converge on a single functional unit, which may either be a single protein or a complex of proteins. The response is either functionally distinct or synergistic between the two pathways but different from the response...
Phylogeny01:23

Phylogeny

Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.

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Related Experiment Video

Updated: May 28, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

MyBioNet: interactively visualize, edit and merge biological networks on the web.

Donglin Huang1, Yiling Huang, Youhuang Bai

  • 1Department of Bioinformatics, State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.

Bioinformatics (Oxford, England)
|October 11, 2011
PubMed
Summary

MyBioNet is a web application for biological network analysis, enabling visualization, editing, and merging of networks. It integrates KEGG metabolic data from 1366 organisms for comprehensive network exploration.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Systems Biology

Background:

  • Biological network analysis is crucial for understanding complex biological systems.
  • Existing tools may lack integrated visualization, editing, and comprehensive data.
  • Need for accessible platforms to explore large-scale biological network data.

Purpose of the Study:

  • To develop MyBioNet, a user-friendly web application for biological network analysis.
  • To integrate and provide access to KEGG metabolic network data for numerous organisms.
  • To facilitate visualization, editing, merging, searching, and navigation of biological networks.

Main Methods:

  • Developed a web-based application using Flex/Actionscript and PHP.
  • Organized and stored KEGG metabolic network data in a MySQL database.
  • Deployed the application on an Apache web server for accessibility.

Main Results:

  • MyBioNet offers intuitive interfaces for visualizing, editing, and merging biological networks.
  • Integrated KEGG metabolic network data from 1366 organisms.
  • Enabled users to search and navigate complex biological networks effectively.

Conclusions:

  • MyBioNet provides a comprehensive and user-friendly platform for biological network analysis.
  • The integration of extensive KEGG data enhances its utility for researchers.
  • Accessible via standard web browsers, promoting wider adoption in biological research.