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Updated: May 28, 2026

High-Throughput Image-Based Quantification of Mitochondrial DNA Synthesis and Distribution
Published on: May 5, 2023
The effects of nuclear reprogramming on mitochondrial DNA replication.
Richard D W Kelly1, Huseyin Sumer, Matthew McKenzie
1Centre for Reproduction and Development, Monash Institute of Medical Research, Monash University, 27-31 Wright Street, Clayton, Victoria, 3168, Australia.
Reprogramming cells to pluripotency disrupts mitochondrial DNA replication. Epigenetic modifiers can restore mitochondrial DNA copy number regulation in induced pluripotent stem cells.
Area of Science:
- Cell Biology
- Mitochondrial Biology
- Epigenetics
Background:
- Embryonic stem cells (ESCs) have low mitochondrial DNA (mtDNA) copy numbers.
- During differentiation, nuclear factors regulate mtDNA replication, notably on Day 6.
- Somatic cells reprogrammed to pluripotency (SC-ES, NT-ES, iPS cells) were investigated for mtDNA replication.
Purpose of the Study:
- To examine mtDNA replication and copy number regulation in reprogrammed somatic cells.
- To compare mtDNA replication dynamics in iPS, SC-ES, and NT-ES cells with ESCs during differentiation.
- To investigate the role of epigenetic modification in restoring mtDNA replication control.
Main Methods:
- Analysis of mtDNA copy number in undifferentiated and differentiating reprogrammed cells.
- Measurement of Nanog and Sox2 expression.
- Assessment of mtDNA replication factors (PolgA, Peo1) expression.
- ATP content measurement.
- Treatment with 5-Azacytidine (DNA methylation inhibitor) prior to differentiation.
Main Results:
- Undifferentiated iPS cells had ESC-like mtDNA levels, while SC-ES and NT-ES cells had higher levels.
- Reprogrammed cells failed to accumulate mtDNA copy number during differentiation, unlike ESCs.
- iPS and SC-ES cells showed impaired ATP regulation compared to differentiating ESCs.
- 5-Azacytidine treatment restored mtDNA copy number accumulation in iPS cells, but not SC-ES or NT-ES cells.
Conclusions:
- Cellular reprogramming disrupts the regulation of mtDNA replication during pluripotency.
- Epigenetic modifiers, like 5-Azacytidine, can re-establish mtDNA copy number control in certain reprogrammed cells (iPS cells).
- These findings highlight the impact of reprogramming on mitochondrial dynamics and suggest epigenetic interventions for restoration.
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