Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Graphs of Polar Equations01:17

Graphs of Polar Equations

The polar coordinate system represents points using a distance from a central point (the pole) and an angle from a reference direction (the polar axis). Unlike rectangular coordinates, polar coordinates are ideal for graphing curves with radial symmetry or periodic behavior.Some general forms of graphs in polar coordinates include the following:Equation of a Circle (Centered at the Pole):A graph where the radius remains constant for all angles traces a circle centered at the pole:Equation of a...
Curvilinear Motion: Polar Coordinates01:27

Curvilinear Motion: Polar Coordinates

In polar coordinates, the motion of a particle follows a curvilinear path. The radial coordinate symbolized as 'r,' extends outward from a fixed origin to the particle, while the angular coordinate, 'θ,' measured in radians, represents the counterclockwise angle between a fixed reference line and the radial line connecting the origin to the particle.
The particle's location is described using a unit vector along the radial direction. Deriving the particle's position with respect to time...
Polar Coordinates01:24

Polar Coordinates

The polar coordinate system offers an alternative to the Cartesian coordinate system for specifying points in a plane, using a distance and an angle instead of x and y coordinates. This system is particularly advantageous in situations involving circular or rotational symmetry, such as in physics or engineering problems involving waves, oscillations, or orbital paths.Defining Polar CoordinatesIn polar coordinates, a point is represented as P(r, ��), where r is the radial distance from a fixed...
Polar Equations of Conics01:29

Polar Equations of Conics

A conic section can be defined in polar coordinates as the set of all points whose distance from a fixed point, known as the focus, bears a constant ratio to their distance from a fixed line, known as the directrix. This constant ratio is called the eccentricity. This definition unifies all types of conic sections—ellipses, parabolas, and hyperbolas—under a single framework. When the focus is positioned at the origin of the polar coordinate system, a single polar equation can describe any conic...
Polar and Cylindrical Coordinates01:22

Polar and Cylindrical Coordinates

The Cartesian coordinate system is a very convenient tool to use when describing the displacements and velocities of objects and the forces acting on them. However, it becomes cumbersome when we need to describe the rotation of objects. So, when describing rotation, the polar coordinate system is generally used.
Curve Equations01:17

Curve Equations

Curves are essential geometric elements characterized by tangent distance, chord length, middle ordinate, and total arc length. These measurements are crucial in understanding a curve's geometric and spatial properties and are defined by the relationship between its radius and its central angle.The tangent distance (T) refers to the straight-line measurement from the intersection point of two tangents to either the start or end of the curve. This distance is influenced by the curve's radius (R)...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Midkine-Notch2 Pathway Mediates Excessive Proliferation of Airway Smooth Muscle Cells in Chronic Obstructive Lung Disease.

Frontiers in pharmacology·2022
Same author

Sodium caseinate decorating on shellac nanoparticles as a stabilizer for the encapsulation of quercetin.

Food chemistry·2022
Same author

Highly efficient red-emitting carbon dots as a "turn-on" temperature probe in living cells.

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy·2022
Same author

Tract-specific white matter microstructural alterations in subjects with schizophrenia and unaffected first-degree relatives.

Brain imaging and behavior·2022
Same author

Thermally stable gold nanorod dispersed silicone composite with plasmonic resonance in the optical communication window.

Nanotechnology·2022
Same author

Copper Doped Carbon Dots for Addressing Bacterial Biofilm Formation, Wound Infection, and Tooth Staining.

ACS nano·2022

Related Experiment Video

Updated: May 28, 2026

Generating Strictly Controlled Stimuli for Figure Recognition Experiments
05:39

Generating Strictly Controlled Stimuli for Figure Recognition Experiments

Published on: March 18, 2019

Sequence comparison via polar coordinates representation and curve tree.

Qi Dai1, Xiaodong Guo, Lihua Li

  • 1College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou, People's Republic of China. daiailiu2004@yahoo.com.cn

Journal of Theoretical Biology
|October 18, 2011
PubMed
Summary

This study introduces a novel bioinformatics method for sequence comparison using polar coordinates to map sequences into curves. This curve tree approach offers a more efficient way to analyze evolutionary relationships and sequence conservation.

More Related Videos

Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons
07:59

Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons

Published on: June 9, 2023

Tree Core Analysis with X-ray Computed Tomography
06:56

Tree Core Analysis with X-ray Computed Tomography

Published on: September 22, 2023

Related Experiment Videos

Last Updated: May 28, 2026

Generating Strictly Controlled Stimuli for Figure Recognition Experiments
05:39

Generating Strictly Controlled Stimuli for Figure Recognition Experiments

Published on: March 18, 2019

Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons
07:59

Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons

Published on: June 9, 2023

Tree Core Analysis with X-ray Computed Tomography
06:56

Tree Core Analysis with X-ray Computed Tomography

Published on: September 22, 2023

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Sequence comparison is crucial for understanding structural, functional, and evolutionary relationships.
  • Current graphical methods face design challenges in sequence comparison.
  • Existing methods may not fully capture sequence distribution characteristics.

Purpose of the Study:

  • To develop a novel and efficient method for biological sequence comparison.
  • To address limitations of existing graphical representation and feature-based measures.
  • To provide a new tool for phylogenetic analysis and sequence characterization.

Main Methods:

  • Mapping biological sequences into closed curves using a polar coordinates method.
  • Constructing a curve tree to numerically characterize these curves.
  • Comparing sequences by evaluating the distance between their respective curve trees.
  • Testing the method's efficacy through phylogenetic analysis.

Main Results:

  • The proposed polar coordinates and curve tree method provides a new approach to sequence comparison.
  • Phylogenetic analysis demonstrated the method's effectiveness.
  • Performance comparison indicated higher efficiency compared to traditional alignment-based methods.

Conclusions:

  • The polar coordinates representation and curve tree method is an efficient tool for biological sequence comparison.
  • This novel approach offers advantages in analyzing evolutionary relationships and sequence conservation.
  • The method shows promise for applications in bioinformatics and computational biology.