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Updated: May 28, 2026

12:08
From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data
Published on: August 13, 2014
Carving: scalable interactive segmentation of neural volume electron microscopy images
C N Straehle1, U Köthe, G Knott
1University of Heidelberg, Heidelberg, Germany HCI, Speyerer Strasse 6, D-69115 Heidelberg.
Abstract:
Interactive segmentation algorithms should respond within seconds and require minimal user guidance. This is a challenge on 3D neural electron microscopy images. We propose a supervoxel-based energy function with a novel background prior that achieves these goals. This is verified by extensive experiments with a robot mimicking human interactions. A graphical user interface offering access to an open source implementation of these algorithms is made available.

