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Updated: May 28, 2026

Comparative Lesions Analysis Through a Targeted Sequencing Approach
Published on: November 5, 2019
Molecular morphometric analysis shows relative intra-tumoural homogeneity for KRAS mutations in colorectal cancer
Liora Farber1, Edna Efrati, Hela Elkin
1Institute of Pathology, Rambam Health Care Campus, PO Box 9602, Haifa 31096, Israel.
Abstract:
KRAS mutation status has a significant role determining anti-epidermal growth factor receptor (anti-EGFR) treatment response in colon carcinoma patients. Malignant transformation is a dynamic process and therefore, it is conceivable that, at a certain point, the tumor cells' mass might be heterogeneous for particular mutations. Therefore, the fraction of tumor cells carrying a particular mutation may be more relevant for treatment than the simple determination of presence or absence of mutation. The purpose of this study is to assess whether or not KRAS mutation status is heterogeneous and, if so, to what extent in colon carcinoma samples. Deoxyribonucleic acid was extracted from formalin-fixed paraffin-embedded samples of colon carcinoma and analyzed for the presence of KRAS mutation. The relative fraction of mutated versus wild-type KRAS alleles was evaluated by real-time polymerase chain reaction. Additionally, the relative fraction of cancer cells in the tissue sample was evaluated using computer assisted morphometric analysis. Using this data, we calculated the fraction of mutation containing cells in the samples. Colon carcinoma (169 cases) were analyzed, and a KRAS mutation was found in 75 cases (44%), of which 42 were available for morphometric analysis. In 41 (97.6%) of these cases, the fraction of mutation containing tumor cells was 50% or higher, indicating the absence of significant KRAS mutation status heterogeneity. There was a strong positive correlation (R = 0.66, P < 0.0001) between the fraction of mutated KRAS alleles and the fraction of cancer cells in the samples. The strong positive correlation between the fraction of mutated KRAS alleles and the fraction of cancer cells in the samples indicate homogeneity of KRAS mutation status in colorectal carcinoma.
Insights
KRAS mutation status in colon cancer is generally homogeneous. Most tumors with KRAS mutations have them in over 50% of cells, suggesting consistent mutation profiles for treatment decisions.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- KRAS mutation status is crucial for predicting anti-EGFR therapy response in colorectal cancer.
- Tumor heterogeneity, including KRAS mutation status, could impact treatment efficacy.
- Assessing the extent of KRAS mutation heterogeneity is important for personalized medicine.
Purpose of the Study:
- To investigate the heterogeneity of KRAS mutation status in colon carcinoma samples.
- To determine the fraction of tumor cells carrying KRAS mutations.
- To correlate KRAS mutation fraction with cancer cell presence in tissue samples.
Main Methods:
- DNA extraction from formalin-fixed paraffin-embedded colon carcinoma samples.
- Real-time PCR to quantify the relative fraction of mutated versus wild-type KRAS alleles.
- Computer-assisted morphometric analysis to determine the fraction of cancer cells.
Main Results:
- KRAS mutations were found in 44% of 169 colon carcinoma cases.
- In 97.6% of analyzed cases with KRAS mutations, over 50% of tumor cells carried the mutation.
- A strong positive correlation (R=0.66, P<0.0001) was observed between mutated KRAS alleles and cancer cell fraction.
Conclusions:
- Colon carcinoma samples exhibit minimal KRAS mutation status heterogeneity.
- The fraction of mutated KRAS alleles strongly correlates with the proportion of cancer cells, indicating homogeneity.
- Findings support the reliability of standard KRAS mutation testing for guiding anti-EGFR therapy in colorectal cancer.
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