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Updated: May 6, 2026

A Deep-sequencing-assisted, Spontaneous Suppressor Screen in the Fission Yeast Schizosaccharomyces pombe
Published on: March 7, 2019
Mutator suppression and escape from replication error-induced extinction in yeast
Alan J Herr1, Masanori Ogawa, Nicole A Lawrence
1Department of Pathology, University of Washington, Seattle, Washington, United States of America.
Abstract:
Cells rely on a network of conserved pathways to govern DNA replication fidelity. Loss of polymerase proofreading or mismatch repair elevates spontaneous mutation and facilitates cellular adaptation. However, double mutants are inviable, suggesting that extreme mutation rates exceed an error threshold. Here we combine alleles that affect DNA polymerase δ (Pol δ) proofreading and mismatch repair to define the maximal error rate in haploid yeast and to characterize genetic suppressors of mutator phenotypes. We show that populations tolerate mutation rates 1,000-fold above wild-type levels but collapse when the rate exceeds 10⁻³ inactivating mutations per gene per cell division. Variants that escape this error-induced extinction (eex) rapidly emerge from mutator clones. One-third of the escape mutants result from second-site changes in Pol δ that suppress the proofreading-deficient phenotype, while two-thirds are extragenic. The structural locations of the Pol δ changes suggest multiple antimutator mechanisms. Our studies reveal the transient nature of eukaryotic mutators and show that mutator phenotypes are readily suppressed by genetic adaptation. This has implications for the role of mutator phenotypes in cancer.
Insights
High mutation rates are tolerated by cells up to a critical error threshold. Genetic adaptation rapidly suppresses these mutator phenotypes, preventing extinction and offering insights into cancer.
Area of Science:
- Genetics
- Molecular Biology
- Cell Biology
Background:
- Cellular DNA replication fidelity is maintained by conserved pathways, including polymerase proofreading and mismatch repair.
- Loss of these repair mechanisms increases mutation rates, which can aid cellular adaptation but may lead to inviability if mutation rates become too high.
Purpose of the Study:
- To determine the maximal tolerable mutation rate in haploid yeast.
- To identify genetic suppressors of mutator phenotypes and understand mechanisms of adaptation to high mutation rates.
Main Methods:
- Combining alleles affecting DNA polymerase delta (Pol δ) proofreading and mismatch repair in yeast.
- Quantifying mutation rates and identifying genetic variants that escape error-induced extinction.
Main Results:
- Yeast populations can tolerate mutation rates up to 1,000-fold higher than wild-type levels.
- Cellular collapse occurs when mutation rates exceed 10⁻³ inactivating mutations per gene per cell division.
- Genetic adaptation, through Pol δ mutations or extragenic changes, rapidly suppresses mutator phenotypes.
Conclusions:
- Mutator phenotypes in eukaryotes are transient and subject to rapid genetic suppression.
- Adaptation mechanisms involve both direct suppression of polymerase errors and broader genetic changes.
- Understanding mutator suppression is crucial for comprehending their role in cancer development.
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