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Whole Genome Sequencing for Rapid Characterization of Rabies Virus Using Nanopore Technology
Published on: August 18, 2023
Rabies in southeast Brazil: a change in the epidemiological pattern
Luzia Helena Queiroz1, Silvana Regina Favoretto, Elenice Maria S Cunha
1Universidade Estadual Paulista, UNESP, Rua Clóvis Pestana, 793, Araçatuba, SP 16050-680, Brazil. lhqueiroz@fmva.unesp.br
Rabies virus strains in Brazil shifted between 1993-2007. Initially, dog-associated strains (antigenic variant 2) dominated, but later bat-associated strains (antigenic variant 3) emerged, indicating distinct rabies virus cycles.
Area of Science:
- Veterinary Epidemiology
- Virology
- Molecular Biology
Background:
- Rabies remains a significant public health concern globally.
- Understanding rabies virus evolution and transmission dynamics is crucial for control strategies.
- Previous studies in Brazil have highlighted the presence of diverse rabies virus lineages.
Purpose of the Study:
- To investigate changes in the epidemiological profile of rabies virus in southeastern Brazil from 1993 to 2007.
- To characterize rabies virus isolates antigenically and genetically.
- To identify distinct endemic cycles of rabies virus in different animal species.
Main Methods:
- Epidemiological analysis of rabies virus isolates from various animal species.
- Antigenic characterization using a panel of eight monoclonal antibodies.
- Genetic characterization through nucleoprotein gene sequencing.
Main Results:
- A shift in the epidemiological profile of rabies virus was observed between 1993-1997 and 1998-2007.
- Antigenic variant 2 (dog-associated) was prevalent in domestic animals from 1993-1997.
- Antigenic variant 3 (bat-associated) was detected in cattle, and four distinct variants were identified in bats and urban pets from 1998-2007.
- Nucleotide similarity analysis revealed two main groups: dog and bat antigenic variants, indicating separate endemic cycles.
Conclusions:
- The study demonstrates a significant alteration in the rabies virus epidemiological profile in southeastern Brazil over a 15-year period.
- Distinct endemic cycles of rabies virus are maintained in different animal populations, particularly between domestic animals and bats.
- These findings underscore the importance of ongoing molecular surveillance for effective rabies control programs.
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