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Updated: May 28, 2026

Using Human Differentially Expressed Gene Lists to Perform Downstream Pathway Enrichment Analysis and Target Prioritization
Published on: October 3, 2025
Gene profiling assay and application: the predictive role in primary therapy.
Debora Fumagalli1, Christine Desmedt, Michail Ignatiadis
1Breast Cancer Translational Research Laboratory, Faculty of Medicine, Université Libre de Bruxelles, Institut Jules Bordet, Bruxelles 1000, Belgium.
Predicting breast cancer treatment response remains challenging. Gene expression profiling in the neoadjuvant setting shows promise for identifying predictive signatures, but further research is needed for clinical application.
Area of Science:
- Oncology
- Genomics
- Biomarkers
Background:
- Breast cancer treatment options like endocrine therapy, chemotherapy, and targeted therapy improve survival.
- Current clinical tests lack predictive value for cancer treatment response.
- Individual markers have demonstrated limited predictive capability.
Purpose of the Study:
- To identify predictive gene expression signatures for breast cancer treatment response.
- To evaluate the utility of gene expression profiling in the neoadjuvant setting.
Main Methods:
- Utilizing gene expression profiling studies.
- Analyzing tumor biopsies from the neoadjuvant setting for multiple time points.
- Assessing direct response to treatment.
Main Results:
- Gene expression profiling studies have been conducted to find predictive signatures.
- The neoadjuvant setting is suitable for assessing treatment response and obtaining tumor samples.
- Current signatures lack sufficient discriminatory power for clinical use.
Conclusions:
- Gene expression profiling shows potential for predicting breast cancer treatment response.
- Further development is needed, including more effective therapies, standardized response definitions, and robust clinical trials.
- Microarrays require further validation before clinical decision-making implementation.
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