RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing

Jing-Ping Hsin1, Amit Sheth, James L Manley

  • 1Department of Biological Sciences, Columbia University, New York, NY 10027, USA.

Science (New York, N.Y.)
|November 5, 2011
PubMed

Insights

Phosphorylation of RNA polymerase II C-terminal domain (CTD) Thr(4) is crucial for histone mRNA processing. This modification, requiring CDK9, helps recruit processing factors to histone genes for efficient gene expression.

Area of Science:

  • Molecular Biology
  • Gene Expression Regulation

Background:

  • The RNA polymerase II C-terminal domain (CTD) features repeats with key phosphorylation sites.
  • Serine 2, 5, and 7 phosphorylations regulate transcription and mRNA precursor processing.

Purpose of the Study:

  • To investigate the role of CTD Thr(4) phosphorylation in gene expression.
  • To determine if Thr(4) phosphorylation is involved in specific mRNA processing events.

Main Methods:

  • Investigated CTD phosphorylation patterns in relation to mRNA processing.
  • Utilized genetic and biochemical approaches to study the function of CTD Thr(4) phosphorylation.
  • Examined the evolutionary conservation of Thr(4) phosphorylation.

Main Results:

  • CTD Thr(4) phosphorylation is specifically required for histone mRNA 3' end processing.
  • Thr(4) phosphorylation facilitates the recruitment of 3' processing factors to histone genes.
  • This modification requires the CTD kinase CDK9 and is conserved across species.

Conclusions:

  • CTD Thr(4) phosphorylation plays a specific role in histone gene expression.
  • This modification is essential for efficient histone mRNA processing and factor recruitment.
  • CTD modifications offer a mechanism for fine-tuning gene expression.

Related Concept Videos

Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
Transfer RNA Synthesis02:36

Transfer RNA Synthesis

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
Pre-mRNA Processing: Modification of pre-mRNA Ends01:35

Pre-mRNA Processing: Modification of pre-mRNA Ends

In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps the cell...
pre-mRNA Processing02:01

pre-mRNA Processing

In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl guanosine). This 5’ cap helps the...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...