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Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
E622, a miniature, virulence-associated mobile element
John Stavrinides1, Morgan W B Kirzinger, Federico C Beasley
1Department of Biology, University of Regina, Regina, Saskatchewan, Canada. john.stavrinides@gmail.com
Abstract:
Miniature inverted terminal repeat elements (MITEs) are nonautonomous mobile elements that have a significant impact on bacterial evolution. Here we characterize E622, a 611-bp virulence-associated MITE from Pseudomonas syringae, which contains no coding region but has almost perfect 168-bp inverted repeats. Using an antibiotic coupling assay, we show that E622 is transposable and can mobilize an antibiotic resistance gene contained between its borders. Its predicted parent element, designated TnE622, has a typical transposon structure with a three-gene operon, consisting of resolvase, integrase, and exeA-like genes, which is bounded by the same terminal inverted repeats as E622. A broader genome level survey of the E622/TnE622 inverted repeats identified homologs in Pseudomonas, Salmonella, Shewanella, Erwinia, Pantoea, and the cyanobacteria Nostoc and Cyanothece, many of which appear to encompass known virulence genes, including genes encoding toxins, enzymes, and type III secreted effectors. Its association with niche-specific genetic determinants, along with its persistence and evolutionary diversification, indicates that this mobile element family has played a prominent role in the evolution of many agriculturally and clinically relevant pathogenic bacteria.
Insights
Miniature inverted terminal repeat elements (MITEs) are mobile DNA sequences impacting bacterial evolution. Researchers found a MITE, E622, can move genes, including antibiotic resistance, and is widespread in pathogenic bacteria.
Area of Science:
- Microbiology
- Bacterial Genetics
- Molecular Evolution
Background:
- Miniature inverted terminal repeat elements (MITEs) are nonautonomous mobile genetic elements.
- MITEs significantly influence bacterial genome evolution and adaptation.
Purpose of the Study:
- To characterize the virulence-associated MITE E622 from Pseudomonas syringae.
- To investigate the mobility and evolutionary significance of E622 and its parent transposon TnE622.
Main Methods:
- Antibiotic coupling assay to assess MITE transposition.
- Genome-level survey to identify homologous inverted repeats in various bacterial species.
- Bioinformatic analysis of predicted parent transposon structure and gene content.
Main Results:
- E622 is a 611-bp MITE with nearly perfect 168-bp inverted repeats.
- E622 demonstrated transposable activity, mobilizing an adjacent antibiotic resistance gene.
- The parent transposon, TnE622, possesses a typical structure with resolvase, integrase, and exeA-like genes.
- Homologous inverted repeats were found across diverse genera including Pseudomonas, Salmonella, and cyanobacteria.
- These elements frequently co-localize with known bacterial virulence genes.
Conclusions:
- The E622/TnE622 mobile element family is actively transposable and capable of gene mobilization.
- This mobile element family has played a significant role in the evolution of agriculturally and clinically important pathogenic bacteria.
- The association of E622/TnE622 with virulence determinants highlights its importance in bacterial pathogenicity and adaptation.
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