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Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Genetic features of the widespread plasmid coding for the carbapenemase OXA-48
Laurent Poirel1, Rémy A Bonnin, Patrice Nordmann
1Service de Bactériologie-Virologie, INSERM U914, Emerging Resistance to Antibiotics, Hôpital de Bicêtre, Assistance Publique/Hôpitaux de Paris, Faculté de Médecine et Université Paris-Sud, K.-Bicêtre, France.
Abstract:
Complete sequencing of plasmid pOXA-48a carrying the bla(OXA-48) gene from a Klebsiella pneumoniae isolate was performed. Its backbone corresponded to that of an IncL/M-type plasmid, in which the bla(OXA-48) gene had been integrated through the acquisition of the Tn1999 composite transposon without any other antibiotic resistance gene. Molecular epidemiology using a collection of international OXA-48 producers revealed the wide diffusion of pOXA-48a or closely related plasmids.
Insights
The OXA-48 carbapenemase gene, found on the pOXA-48a plasmid in Klebsiella pneumoniae, has spread globally. This plasmid lacks other antibiotic resistance genes, highlighting a specific threat in antimicrobial resistance.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- The bla(OXA-48) gene confers resistance to carbapenem antibiotics.
- Carbapenem resistance is a significant global health threat.
- Plasmid-mediated resistance facilitates rapid dissemination of antimicrobial resistance genes.
Purpose of the Study:
- To fully sequence the pOXA-48a plasmid carrying the bla(OXA-48) gene.
- To investigate the genetic structure and origin of the pOXA-48a plasmid.
- To assess the prevalence and spread of pOXA-48a and related plasmids.
Main Methods:
- Whole-genome sequencing of the pOXA-48a plasmid from a Klebsiella pneumoniae isolate.
- Bioinformatic analysis to determine plasmid backbone and gene integration.
- Molecular epidemiology using a collection of international OXA-48-producing bacterial isolates.
Main Results:
- Complete sequencing revealed pOXA-48a is an IncL/M-type plasmid.
- The bla(OXA-48) gene was integrated via the Tn1999 composite transposon.
- No other antibiotic resistance genes were found on the pOXA-48a plasmid.
- Molecular epidemiology confirmed the widespread international distribution of pOXA-48a or similar plasmids.
Conclusions:
- The pOXA-48a plasmid is a key vehicle for the dissemination of the OXA-48 carbapenemase.
- The Tn1999 transposon facilitated the acquisition of bla(OXA-48) into a common plasmid backbone.
- The global spread of pOXA-48a poses a significant challenge for infection control and treatment strategies.
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