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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
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Related Experiment Video

Updated: May 27, 2026

Technical Demonstration of Whole Genome Array Comparative Genomic Hybridization
16:37

Technical Demonstration of Whole Genome Array Comparative Genomic Hybridization

Published on: August 5, 2008

Interpretation of array comparative genome hybridization data: a major challenge.

A C J Gijsbers1, J Schoumans, C A L Ruivenkamp

  • 1Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Cytogenetic and Genome Research
|November 17, 2011
PubMed
Summary

High-resolution array comparative genome hybridization (array CGH) detects copy number variants (CNVs) in both patients and healthy individuals. This review presents a clinical workflow for interpreting CNVs in routine diagnostics.

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Area of Science:

  • Genetics
  • Genomic Medicine
  • Clinical Diagnostics

Background:

  • High-resolution array comparative genome hybridization (array CGH) identifies numerous copy number variants (CNVs).
  • CNVs are found in patients with developmental delay and congenital anomalies, but also in healthy individuals.
  • The prevalence of CNVs in the general population complicates the interpretation of their clinical significance.

Purpose of the Study:

  • To present a general clinical workflow for the interpretation of CNVs.
  • To aid in routine diagnostics for patients with suspected genetic disorders.
  • To address the challenge of interpreting CNV clinical significance.

Main Methods:

  • Review of clinical experience in interpreting CNVs.
  • Development of a diagnostic workflow for CNV analysis.
  • Application of array CGH technology.

Main Results:

  • Array CGH is a powerful tool for detecting CNVs.
  • A significant number of CNVs exist in the healthy population.
  • A structured approach is necessary for accurate CNV interpretation.

Conclusions:

  • Interpreting the clinical significance of CNVs requires a systematic approach.
  • The presented workflow can assist in routine diagnostic settings.
  • Distinguishing pathogenic CNVs from benign variants is crucial for patient care.