Binding of oxindole-Schiff base copper(II) complexes to DNA and its modulation by the ligand
Vivian Chagas da Silveira1, Henri Benezra, Juliana Silva Luz
1Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Abstract:
Previous studies on copper(II) complexes with oxindole-Schiff base ligands have shown their potential antitumor activity towards different cells, inducing apoptosis through a preferential attack to DNA and/or mitochondria. Herein, we better characterize the interactions between some of these copper(II) complexes and DNA. Investigations on its binding ability to DNA were carried out by fluorescence measurements in competitive experiments with ethidium bromide, using plasmidial or calf-thymus DNA. These results indicated an efficient binding process similar to that observed with copper(II)-phenanthroline species, [Cu(o-phen)(2)](2+), with binding constants in the range 3 to 9×10(2) M(-1). DNA cleavage experiments in the presence and absence of distamycin, a recognized binder of DNA, indicated that this binding probably occurs at major or minor groove, leading to double-strand DNA cleavage, and being modulated by the imine ligand. Corroborating these data, discrete changes in EPR spectra of the studied complexes were observed in the presence of DNA, while more remarkable changes were observed in the presence of nucleotides (AMP, GMP, CMP or UMP). Additional evidence for preferential coordination of the copper centers to the bases guanine or cytosine was obtained from titrations of these complexes with each nucleotide, monitored by absorption spectral changes. Therefore, the obtained data point out to their action as groove binders to DNA bases, rather than as intercalators or covalent cross-linkers. Further investigations by SDS PAGE using (32)P-ATP or (32)P-oligonucleotides attested that no hydrolysis of phosphate linkage in DNA or RNA occurs, in the presence of such complexes, confirming their main oxidative mechanism of action.
Insights
Copper(II) complexes with oxindole-Schiff base ligands bind to DNA grooves, causing double-strand breaks. These groove binders exhibit an oxidative mechanism of action, distinct from intercalation or cross-linking.
Area of Science:
- Inorganic Chemistry
- Biochemistry
- Molecular Biology
Background:
- Copper(II) complexes with oxindole-Schiff base ligands show promise as antitumor agents.
- These complexes induce apoptosis via DNA and/or mitochondrial damage.
Purpose of the Study:
- To elucidate the interaction mechanisms between copper(II)-oxindole-Schiff base complexes and DNA.
- To characterize the DNA binding and cleavage activities of these complexes.
Main Methods:
- Fluorescence spectroscopy with ethidium bromide competition assays.
- DNA cleavage assays in the presence/absence of distamycin.
- Electron paramagnetic resonance (EPR) spectroscopy and UV-Vis titrations with nucleotides.
Main Results:
- Complexes exhibit efficient DNA binding (K(b) ≈ 3-9×10(2) M⁻¹), similar to copper(II)-phenanthroline species.
- DNA cleavage occurs at major/minor grooves, modulated by the imine ligand, leading to double-strand breaks.
- Preferential coordination to guanine and cytosine bases was observed, with no phosphate linkage hydrolysis.
Conclusions:
- The copper(II) complexes act as DNA groove binders, not intercalators or covalent cross-linkers.
- Their primary mechanism involves oxidative DNA damage.
- Imine ligand modification can modulate DNA binding and cleavage activities.
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