Binding of oxindole-Schiff base copper(II) complexes to DNA and its modulation by the ligand

Vivian Chagas da Silveira1, Henri Benezra, Juliana Silva Luz

  • 1Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.

Insights

Copper(II) complexes with oxindole-Schiff base ligands bind to DNA grooves, causing double-strand breaks. These groove binders exhibit an oxidative mechanism of action, distinct from intercalation or cross-linking.

Area of Science:

  • Inorganic Chemistry
  • Biochemistry
  • Molecular Biology

Background:

  • Copper(II) complexes with oxindole-Schiff base ligands show promise as antitumor agents.
  • These complexes induce apoptosis via DNA and/or mitochondrial damage.

Purpose of the Study:

  • To elucidate the interaction mechanisms between copper(II)-oxindole-Schiff base complexes and DNA.
  • To characterize the DNA binding and cleavage activities of these complexes.

Main Methods:

  • Fluorescence spectroscopy with ethidium bromide competition assays.
  • DNA cleavage assays in the presence/absence of distamycin.
  • Electron paramagnetic resonance (EPR) spectroscopy and UV-Vis titrations with nucleotides.

Main Results:

  • Complexes exhibit efficient DNA binding (K(b) ≈ 3-9×10(2) M⁻¹), similar to copper(II)-phenanthroline species.
  • DNA cleavage occurs at major/minor grooves, modulated by the imine ligand, leading to double-strand breaks.
  • Preferential coordination to guanine and cytosine bases was observed, with no phosphate linkage hydrolysis.

Conclusions:

  • The copper(II) complexes act as DNA groove binders, not intercalators or covalent cross-linkers.
  • Their primary mechanism involves oxidative DNA damage.
  • Imine ligand modification can modulate DNA binding and cleavage activities.

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