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Updated: May 27, 2026

Purification of Ubiquitinated p53 Proteins from Mammalian Cells
Published on: March 21, 2022
Specific domains of nucleolin interact with Hdm2 and antagonize Hdm2-mediated p53 ubiquitination
Purvi Bhatt1, Claire d'Avout, Naomi S Kane
1New York University School of Medicine, NY, USA.
Abstract:
Nucleolin is an abundant multifunctional nucleolar protein with defined roles in ribosomal RNA processing, RNA polymerase I catalyzed transcription and the regulation of apoptosis. Earlier we reported that human nucleolin binds to the p53 antagonist human double minute 2 (Hdm2) as determined by reciprocal co-immunoprecipitation assays using cell lysates. We also demonstrated that nucleolin antagonizes Hdm2-mediated degradation of p53. Here, we identify specific domains of nucleolin and Hdm2 proteins that support mutual interaction and investigate the implications of complex formation on p53 ubiquitination and protein levels. Our data indicate that the nucleolin N-terminus as well as the central RNA-binding domain (RBD) are predominantly involved in binding to Hdm2. The nucleolin RBD robustly bound to the NLS/NES (nuclear localization and export signals) domain of Hdm2 in vitro, while the N-terminus of nucleolin preferentially associated with the Hdm2 RING (really interesting new gene) domain expressed in cells. We further demonstrate that the C-terminal glycine-arginine rich domain of nucleolin serves as the predominant binding domain for direct interaction with p53. While overexpression of nucleolin or its various domains had no significant effect on Hdm2 auto-ubiquitination, the nucleolin RBD antagonized the Hdm2 E3 ligase activity against p53, leading to p53 stabilization. Conversely, the adjacent glycine-arginine rich domain of nucleolin interacted with p53 causing a modest stimulatory effect on p53 ubiquitination. These data suggest that changes in nucleolin conformation can alter the availabilities of such domains in vivo to modulate the overall impact of nucleolin on Hdm2 activity and hence on p53 stability.
Insights
Nucleolin protein interacts with Hdm2, modulating p53 stability. Specific nucleolin domains affect Hdm2
Area of Science:
- Molecular and Cellular Biology
- Protein-protein interactions
- Cancer research
Background:
- Nucleolin is a nucleolar protein involved in rRNA processing, transcription, and apoptosis.
- Previous studies showed nucleolin binds Hdm2 and antagonizes Hdm2-mediated p53 degradation.
Purpose of the Study:
- To identify specific domains of nucleolin and Hdm2 involved in their interaction.
- To investigate the impact of nucleolin-Hdm2 complex formation on p53 ubiquitination and protein levels.
Main Methods:
- Co-immunoprecipitation assays to confirm protein interactions.
- In vitro binding assays using purified protein domains.
- Analysis of p53 ubiquitination and protein levels upon nucleolin domain overexpression.
Main Results:
- Nucleolin's N-terminus and RNA-binding domain (RBD) interact with Hdm2.
- Nucleolin RBD binds Hdm2's NLS/NES domain, while the N-terminus binds Hdm2's RING domain.
- Nucleolin RBD antagonizes Hdm2 E3 ligase activity against p53, stabilizing p53.
- Nucleolin's glycine-arginine rich domain interacts with p53, modestly stimulating p53 ubiquitination.
Conclusions:
- Nucleolin's interaction with Hdm2 is domain-specific.
- Nucleolin's RNA-binding domain plays a key role in antagonizing Hdm2's E3 ligase activity towards p53.
- Conformational changes in nucleolin can modulate Hdm2 activity and p53 stability.
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