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Updated: May 27, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
Published on: December 9, 2022
Recombinant human MDM2 oncoprotein shows sequence composition selectivity for binding to both RNA and DNA
Christine Challen1, John J Anderson, Zofia M A Chrzanowska-Lightowlers
1Northern Institute for Cancer Research, Newcastle University Medical School, Newcastle-upon-Tyne, UK.
The MDM2 protein binds both DNA and RNA. DNA binding is selective to purine-rich regions via the carboxy-terminal domain, suggesting distinct binding mechanisms.
Area of Science:
- Molecular Biology
- Oncology
- Biochemistry
Background:
- MDM2 is a nucleo-phosphoprotein involved in oncogenesis by binding p53.
- MDM2 possesses domains suggesting nucleic acid binding capabilities.
- Previous studies indicated MDM2 binds RNA, but DNA binding remained unexamined.
Purpose of the Study:
- To investigate the DNA binding capacity of bacterially expressed human MDM2.
- To characterize the DNA binding specificity and domain involvement of MDM2.
- To compare DNA and RNA binding mechanisms of MDM2.
Main Methods:
- Bacterial expression of human MDM2 protein.
- DNA and RNA binding assays.
- Antibody inhibition assay for RNA binding.
- Selection cloning and sequence analysis of DNA binding sites.
Main Results:
- Bacterially expressed MDM2 binds both DNA and RNA.
- MDM2 DNA binding is selective for oligopurine:pyrimidine-rich sequences.
- DNA binding involves the carboxy-terminal domain, distinct from RNA binding.
- An MDM2-specific antibody inhibited RNA binding.
Conclusions:
- MDM2 exhibits dual DNA and RNA binding capabilities.
- Preferential DNA binding may involve Zinc Finger or Ring Finger domains.
- MDM2 likely employs different mechanisms for DNA and RNA binding.
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