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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
p53-Dependent induction of PVT1 and miR-1204
Anthony M Barsotti1, Rachel Beckerman, Oleg Laptenko
1Department of Biological Sciences, Columbia University, New York, New York 10027, USA.
Abstract:
p53 is a tumor suppressor protein that acts as a transcription factor to regulate (either positively or negatively) a plethora of downstream target genes. Although its ability to induce protein coding genes is well documented, recent studies have implicated p53 in the regulation of non-coding RNAs, including both microRNAs (e.g. miR-34a) and long non-coding RNAs (e.g. lincRNA-p21). We have identified the non-protein coding locus PVT1 as a p53-inducible target gene. PVT1, a very large (>300 kb) locus located downstream of c-myc on chromosome 8q24, produces a wide variety of spliced non-coding RNAs as well as a cluster of six annotated microRNAs: miR-1204, miR-1205, miR-1206, miR-1207-5p, miR-1207-3p, and miR-1208. Chromatin immunoprecipitation (ChIP), electrophoretic mobility shift assay (EMSA), and luciferase assays reveal that p53 binds and activates a canonical response element within the vicinity of miR-1204. Consistently, we demonstrate the p53-dependent induction of endogenous PVT1 transcripts and consequent up-regulation of mature miR-1204. Finally, we have shown that ectopic expression of miR-1204 leads to increased p53 levels and causes cell death in a partially p53-dependent manner.
Insights
The tumor suppressor protein p53 directly regulates the PVT1 locus, inducing miR-1204. This microRNA then increases p53 levels, promoting cell death in cancer research.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- The tumor suppressor protein p53 is a transcription factor regulating gene expression.
- p53's role in regulating non-coding RNAs, including microRNAs and long non-coding RNAs, is an emerging area of research.
- The PVT1 locus is a large, complex non-coding RNA-producing region implicated in cancer.
Purpose of the Study:
- To investigate whether the PVT1 locus is a direct target of p53 transcriptional regulation.
- To determine if p53 regulates any of the microRNAs encoded within the PVT1 locus.
- To explore the functional consequences of PVT1-derived microRNA regulation by p53.
Main Methods:
- Chromatin immunoprecipitation (ChIP) to identify p53 binding sites.
- Electrophoretic mobility shift assay (EMSA) to confirm p53-DNA interaction.
- Luciferase reporter assays to assess transcriptional activation.
- Quantitative analysis of endogenous PVT1 transcripts and mature miR-1204 levels.
- Functional assays involving ectopic miR-1204 expression.
Main Results:
- p53 directly binds to and activates a response element near miR-1204 within the PVT1 locus.
- p53-dependent induction of PVT1 transcripts and subsequent upregulation of mature miR-1204 were observed.
- Ectopic expression of miR-1204 resulted in elevated p53 levels.
- miR-1204 overexpression induced cell death in a manner partially dependent on p53.
Conclusions:
- The PVT1 locus is a novel p53 target gene, with p53 directly regulating miR-1204 transcription.
- A feedback loop exists where p53 induces miR-1204, which in turn enhances p53 levels and promotes cell death.
- These findings reveal a new regulatory axis involving p53, PVT1, and miR-1204 with implications for cancer biology.
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