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Updated: May 27, 2026

Atomic Force Microscopy Investigations of DNA Lesion Recognition in Nucleotide Excision Repair
Published on: May 24, 2017
Visualization of eukaryotic DNA mismatch repair reveals distinct recognition and repair intermediates
Hans Hombauer1, Christopher S Campbell, Catherine E Smith
1Ludwig Institute for Cancer Research, University of California School of Medicine, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA.
Abstract:
DNA mismatch repair (MMR) increases replication fidelity by eliminating mispaired bases resulting from replication errors. In Saccharomyces cerevisiae, mispairs are primarily detected by the Msh2-Msh6 complex and corrected following recruitment of the Mlh1-Pms1 complex. Here, we visualized functional fluorescent versions of Msh2-Msh6 and Mlh1-Pms1 in living cells. We found that the Msh2-Msh6 complex is an S phase component of replication centers independent of mispaired bases; this localized pool accounted for 10%-15% of MMR in wild-type cells but was essential for MMR in the absence of Exo1. Unexpectedly, Mlh1-Pms1 formed nuclear foci that, although dependent on Msh2-Msh6 for formation, rarely colocalized with Msh2-Msh6 replication-associated foci. Mlh1-Pms1 foci increased when the number of mispaired bases was increased; in contrast, Msh2-Msh6 foci were unaffected. These findings suggest the presence of replication machinery-coupled and -independent pathways for mispair recognition by Msh2-Msh6, which direct formation of superstoichiometric Mlh1-Pms1 foci that represent sites of active MMR.
Insights
DNA mismatch repair (MMR) uses Msh2-Msh6 and Mlh1-Pms1 complexes to fix replication errors. Visualizing these proteins revealed distinct roles and pathways in DNA repair, enhancing our understanding of replication fidelity.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA mismatch repair (MMR) is crucial for maintaining genomic stability by correcting replication errors.
- In yeast, the Msh2-Msh6 complex detects mispairs, and the Mlh1-Pms1 complex facilitates correction.
Purpose of the Study:
- To visualize the dynamic behavior of Msh2-Msh6 and Mlh1-Pms1 complexes in living yeast cells.
- To elucidate the distinct roles and localization patterns of MMR proteins during DNA repair.
Main Methods:
- Utilized functional fluorescently tagged Msh2-Msh6 and Mlh1-Pms1 proteins.
- Observed protein localization and dynamics in living Saccharomyces cerevisiae cells using microscopy.
- Manipulated the number of mispaired bases to assess MMR complex responses.
Main Results:
- Msh2-Msh6 localizes to replication centers during S phase, independent of mispaired bases, contributing to MMR.
- Mlh1-Pms1 forms nuclear foci dependent on Msh2-Msh6 but rarely colocalizes with it.
- Mlh1-Pms1 foci formation is stimulated by increased mispaired bases, unlike Msh2-Msh6 foci.
Conclusions:
- Msh2-Msh6 participates in both replication-coupled and independent pathways for mispair recognition.
- Distinct pathways involving Msh2-Msh6 lead to the formation of Mlh1-Pms1 foci at active MMR sites.
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