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Published on: August 11, 2023
MicroRNA alterations and associated aberrant DNA methylation patterns across multiple sample types in oral squamous
Erik D Wiklund1, Shan Gao, Toby Hulf
1Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
Background:
MicroRNA (miRNA) expression is broadly altered in cancer, but few studies have investigated miRNA deregulation in oral squamous cell carcinoma (OSCC). Epigenetic mechanisms are involved in the regulation of >30 miRNA genes in a range of tissues, and we aimed to investigate this further in OSCC.
Methods:
TaqMan® qRT-PCR arrays and individual assays were used to profile miRNA expression in a panel of 25 tumors with matched adjacent tissues from patients with OSCC, and 8 control paired oral stroma and epithelium from healthy volunteers. Associated DNA methylation changes of candidate epigenetically deregulated miRNA genes were measured in the same samples using the MassArray® mass spectrometry platform. MiRNA expression and DNA methylation changes were also investigated in FACS sorted CD44(high) oral cancer stem cells from primary tumor samples (CSCs), and in oral rinse and saliva from 15 OSCC patients and 7 healthy volunteers.
Results:
MiRNA expression patterns were consistent in healthy oral epithelium and stroma, but broadly altered in both tumor and adjacent tissue from OSCC patients. MiR-375 is repressed and miR-127 activated in OSCC, and we confirm previous reports of miR-137 hypermethylation in oral cancer. The miR-200 s/miR-205 were epigenetically activated in tumors vs normal tissues, but repressed in the absence of DNA hypermethylation specifically in CD44(high) oral CSCs. Aberrant miR-375 and miR-200a expression and miR-200c-141 methylation could be detected in and distinguish OSCC patient oral rinse and saliva from healthy volunteers, suggesting a potential clinical application for OSCC specific miRNA signatures in oral fluids.
Conclusions:
MiRNA expression and DNA methylation changes are a common event in OSCC, and we suggest miR-375, miR-127, miR-137, the miR-200 family and miR-205 as promising candidates for future investigations. Although overall activated in OSCC, miR-200/miR-205 suppression in oral CSCs indicate that cell specific silencing of these miRNAs may drive tumor expansion and progression.
Insights
MicroRNA (miRNA) deregulation and DNA methylation changes are common in oral squamous cell carcinoma (OSCC). Specific miRNA signatures in oral fluids may aid in clinical detection of OSCC.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- MicroRNA (miRNA) deregulation is observed in various cancers, yet its role in oral squamous cell carcinoma (OSCC) requires further investigation.
- Epigenetic mechanisms are known regulators of miRNA genes across tissues, prompting a focus on their involvement in OSCC.
Purpose of the Study:
- To investigate miRNA expression alterations and associated DNA methylation changes in oral squamous cell carcinoma (OSCC).
- To explore the potential of miRNA signatures in oral fluids as biomarkers for OSCC detection.
Main Methods:
- Profiling miRNA expression using qRT-PCR arrays and individual assays in OSCC tumors and matched adjacent tissues.
- Assessing DNA methylation of candidate miRNA genes via MassArray® mass spectrometry.
- Analyzing miRNA expression and methylation in oral cancer stem cells (CSCs) and oral rinse/saliva samples.
Main Results:
- MiRNA expression patterns differed significantly between healthy oral tissues and OSCC samples.
- Specific miRNAs (e.g., miR-375, miR-127, miR-137, miR-200 family, miR-205) showed significant epigenetic alterations in OSCC.
- Aberrant miRNA expression and methylation in oral rinse and saliva could distinguish OSCC patients from healthy volunteers.
Conclusions:
- MiRNA expression and DNA methylation changes are prevalent in OSCC.
- miR-375, miR-127, miR-137, the miR-200 family, and miR-205 are identified as promising targets for further research in OSCC.
- Suppression of miR-200/miR-205 in oral CSCs suggests a role in tumor progression, while their presence in oral fluids indicates potential diagnostic utility.
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