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Enzyme Kinetics01:19

Enzyme Kinetics

Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Introduction to Enzyme Kinetics01:19

Introduction to Enzyme Kinetics

Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
Turnover Number and Catalytic Efficiency01:19

Turnover Number and Catalytic Efficiency

The turnover number of an enzyme is the maximum number of substrate molecules it can transform per unit time. Turnover numbers for most enzymes range from 1 to 1000 molecules per second. Catalase has the known highest turnover number, capable of converting up to 2.8×106 molecules of hydrogen peroxide into water and oxygen per second. Lysozyme has the lowest known turnover number of half a molecule per second.
Chymotrypsin is a pancreatic enzyme that breaks down proteins during digestion. The...
Catalytically Perfect Enzymes01:07

Catalytically Perfect Enzymes

The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
Introduction to Mechanisms of Enzyme Catalysis01:13

Introduction to Mechanisms of Enzyme Catalysis

For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes a mild...
Enzymes02:34

Enzymes

Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...

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Related Experiment Video

Updated: May 27, 2026

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
09:42

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

Dynamic disorder in single-enzyme experiments: facts and artifacts.

Tatyana G Terentyeva1, Hans Engelkamp, Alan E Rowan

  • 1Photochemistry & Spectroscopy, Department of Chemistry, Katholieke Universiteit Leuven, Leuven, Belgium.

ACS Nano
|December 3, 2011
PubMed
Summary

Change point analysis offers a more accurate method for analyzing single-molecule fluorescence data compared to traditional binning and thresholding. This improved analysis revealed no dynamic disorder in enzymatic reactions, challenging previous assumptions.

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Last Updated: May 27, 2026

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
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Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes

Published on: January 16, 2016

Steady-state, Pre-steady-state, and Single-turnover Kinetic Measurement for DNA Glycosylase Activity
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Steady-state, Pre-steady-state, and Single-turnover Kinetic Measurement for DNA Glycosylase Activity

Published on: August 19, 2013

The Use of Chemostats in Microbial Systems Biology
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The Use of Chemostats in Microbial Systems Biology

Published on: October 14, 2013

Area of Science:

  • Biophysics
  • Enzymology
  • Analytical Chemistry

Background:

  • Single-molecule fluorescence microscopy enables real-time monitoring of enzymatic reactions through discrete on/off states.
  • Experimental noise complicates accurate assignment of these states, impacting data interpretation.

Purpose of the Study:

  • To systematically compare the performance of change point analysis against the widely used binning and thresholding approach for single-molecule fluorescence data.
  • To evaluate the accuracy of these methods in extracting kinetic parameters and identifying dynamic disorder in enzymatic reactions.

Main Methods:

  • Simulated single-molecule fluorescence time series data were generated to assess analytical method performance.
  • Change point analysis was applied and compared to traditional binning and thresholding techniques.
  • Experimental data from the enzyme alpha-chymotrypsin were analyzed using change point analysis.

Main Results:

  • Binning and thresholding methods can introduce artifacts, distorting on/off histograms and autocorrelation functions, especially with varying signal-to-noise ratios.
  • Change point analysis demonstrates superior accuracy, particularly for experimental data with fluctuating background intensities.
  • Analysis of alpha-chymotrypsin data using change point analysis did not reveal evidence of dynamic disorder.

Conclusions:

  • Change point analysis is a more robust method for analyzing single-molecule fluorescence data, offering higher accuracy than conventional approaches.
  • The absence of dynamic disorder in alpha-chymotrypsin suggests it may not be a universal characteristic of enzymatic reactions.
  • Re-evaluation of dynamic disorder in enzyme catalysis is warranted based on improved analytical techniques.