Related Experiment Video
Updated: May 26, 2026

A Fluorogenic Peptide Cleavage Assay to Screen for Proteolytic Activity: Applications for coronavirus spike protein activation
Published on: January 9, 2019
The paramyxovirus fusion protein C-terminal region: mutagenesis indicates an indivisible protein unit
Aarohi Zokarkar1, Robert A Lamb
1Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, USA.
Abstract:
Paramyxoviruses enter host cells by fusing the viral envelope with a host cell membrane. Fusion is mediated by the viral fusion (F) protein, and it undergoes large irreversible conformational changes to cause membrane merger. The C terminus of PIV5 F contains a membrane-proximal 7-residue external region (MPER), followed by the transmembrane (TM) domain and a 20-residue cytoplasmic tail. To study the sequence requirements of the F protein C terminus for fusion, we constructed chimeras containing the ectodomain of parainfluenza virus 5 F (PIV5 F) and either the MPER, the TM domain, or the cytoplasmic tail of the F proteins of the paramyxoviruses measles virus, mumps virus, Newcastle disease virus, human parainfluenza virus 3, and Nipah virus. The chimeras were expressed, and their ability to cause cell fusion was analyzed. The chimeric proteins were variably expressed at the cell surface. We found that chimeras containing the ectodomain of PIV5 F with the C terminus of other paramyxoviruses were unable to cause cell fusion. Fusion could be restored by decreasing the activation energy of refolding through introduction of a destabilizing mutation (S443P). Replacing individual regions, singly or doubly, in the chimeras with native PIV5 F sequences restored fusion to various degrees, but it did not have an additive effect in restoring activity. Thus, the F protein C terminus may be a specific structure that only functions with its cognate ectodomain. Alanine scanning mutagenesis of MPER indicates that it has a regulatory role in fusion since both hyperfusogenic and hypofusogenic mutations were found.
Insights
The C terminus of the paramyxovirus fusion (F) protein is specific to its ectodomain for effective cell fusion. Introducing destabilizing mutations or native sequences partially restored fusion, indicating a structure-specific interaction.
Area of Science:
- Virology
- Molecular Biology
- Cell Biology
Background:
- Paramyxoviruses initiate host cell entry via viral envelope and host cell membrane fusion.
- This fusion process is orchestrated by the viral fusion (F) protein, which undergoes significant conformational changes.
- The C terminus of the parainfluenza virus 5 F protein comprises a membrane-proximal external region (MPER), transmembrane domain, and cytoplasmic tail.
Purpose of the Study:
- To investigate the sequence-specific requirements of the F protein's C terminus for mediating viral fusion.
- To determine if heterologous C-terminal regions from other paramyxoviruses can functionally interact with the PIV5 F ectodomain.
Main Methods:
- Construction of chimeric F proteins combining the PIV5 F ectodomain with C-terminal regions (MPER, TM, cytoplasmic tail) from various paramyxoviruses.
- Analysis of chimeric protein expression at the cell surface.
- Assessment of the cell-cell fusion capabilities mediated by the chimeric F proteins.
- Introduction of destabilizing mutations (e.g., S443P) and native PIV5 F sequences into chimeric constructs.
- Alanine scanning mutagenesis of the MPER to elucidate its regulatory role in fusion.
Main Results:
- Chimeric F proteins with heterologous C termini generally failed to induce cell fusion, despite variable surface expression.
- Fusion activity was partially restored by introducing a destabilizing mutation (S443P) or by replacing specific regions with native PIV5 F sequences.
- Restoration of fusion was not additive, suggesting a requirement for specific structural compatibility between the ectodomain and C terminus.
- Alanine scanning mutagenesis of the MPER revealed both hyperfusogenic and hypofusogenic mutations, highlighting its regulatory function.
Conclusions:
- The C terminus of the paramyxovirus F protein likely forms a specific structure that is functionally dependent on its cognate ectodomain.
- The MPER region plays a critical regulatory role in the fusion process.
- Understanding these specific interactions is crucial for deciphering the molecular mechanisms of paramyxovirus entry.
Related Concept Videos
Leaky Scanning
Protein Complexes with Interchangeable Parts
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
Protein Complex Assembly
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Mutations
Tagging and Fusion Proteins

