Related Experiment Video
Updated: May 26, 2026

06:33
A Versatile Pipeline for Analyzing Dynamic Changes in Nuclear Bodies in a Variety of Cell Types
Published on: June 28, 2024
A view of nuclear Polycomb bodies
Vincenzo Pirrotta1, Hua-Bing Li
1Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ 08854, USA. pirrotta@biology.rutgers.edu
Current Opinion in Genetics & Development
|December 20, 2011
Summary
Polycomb group (PcG) proteins form nuclear bodies. Insulator elements, not Polycomb Response Elements (PREs), drive PcG site co-localization, suggesting insulators mediate gene shuttling between PcG bodies and transcription factories.
Area of Science:
- Cell Biology
- Genetics
- Epigenetics
Background:
- Polycomb group (PcG) proteins organize into nuclear foci known as PcG bodies.
- PcG protein concentration in these bodies can result from linear clustering of genomic binding sites.
- Distant PcG sites can interact and co-localize within PcG bodies, particularly when genes are repressed.
Purpose of the Study:
- To investigate the mechanisms underlying the co-localization of Polycomb group (PcG) protein binding sites.
- To determine the role of insulator elements versus Polycomb Response Elements (PREs) in PcG site co-localization.
- To propose a model for the dynamic localization of PcG target genes within the nucleus.
Main Methods:
- Experiments utilizing transgenes engineered with PcG binding sites.
- Analysis of PcG protein co-localization patterns in relation to insulator elements and PREs.
- Observation of PcG site behavior in both repressed and active transcriptional states.
Main Results:
- Co-localization of PcG binding sites is dependent on the presence of insulator elements.
- Polycomb Response Elements (PREs) are not the primary drivers of this co-localization.
- PcG site co-localization occurs irrespective of the transcriptional state (active or repressed).
Conclusions:
- Insulator elements play a crucial role in mediating the spatial organization of PcG binding sites.
- A model is proposed where insulator proteins facilitate the dynamic movement of PcG target genes.
- Genes shuttle between PcG bodies (when repressed) and transcription factories (when active), regulated by insulators.
Related Concept Videos
Euchromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin
The extent of chromatin compaction can be studied by staining chromatin using specific DNA binding dyes. Under the microscope, the dense-compacted regions take up more dye, appearing darker, while the less-compact areas take up less dye and appear lighter. Based on the compaction level, chromatins are classified into two primary forms – euchromatin and heterochromatin.
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Euchromatin is the less dense region of the chromatin and stains lighter. Euchromatin contains histone H3 extensively...
Nucleosome Remodeling
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Polytene Chromosomes
Polytene chromosomes are giant interphase chromosomes with several DNA strands placed side by side. They were discovered in the year 1881 by Balbiani in salivary glands, intestine, muscles, malpighian tubules, and hypoderm of larvae Chironomus plumosus. Hence, these are also called "Salivary gland chromosomes." These are found in insects of the order Diptera and Collembola; in certain organs of mammals; and synergids, antipodes of flowering plants. Polytene chromosomes are also regularly...
Polytene Chromosomes
Polytene chromosomes are giant interphase chromosomes with several DNA strands placed side by side. They were discovered in the year 1881 by Balbiani in salivary glands, intestine, muscles, malpighian tubules, and hypoderm of larvae Chironomus plumosus. Hence, these are also called "Salivary gland chromosomes." These are found in insects of the order Diptera and Collembola; in certain organs of mammals; and synergids, antipodes of flowering plants. Polytene chromosomes are also regularly...
Additional Subnuclear Structures
The eukaryotic nucleus is a double membrane-bound organelle that contains nearly all of the cell’s genetic material in the form of chromosomes. It is rightly called the “brain” of the cell as it shoulders the responsibility of responding to various physiological processes, stress, altered metabolic conditions, and other cellular signals.
The nucleus contains many membrane-less subnuclear organelles or nuclear bodies, such as nucleoli, Cajal bodies, speckles, paraspeckles, etc. These nuclear...
The nucleus contains many membrane-less subnuclear organelles or nuclear bodies, such as nucleoli, Cajal bodies, speckles, paraspeckles, etc. These nuclear...

