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Updated: May 26, 2026

3D Culturing of Organoids from the Intestinal Villi Epithelium Undergoing Dedifferentiation
Published on: April 1, 2021
Notch signaling modulates proliferation and differentiation of intestinal crypt base columnar stem cells
Kelli L VanDussen1, Alexis J Carulli, Theresa M Keeley
1Department of Molecular & Integrative Physiology, The University of Michigan, Ann Arbor, MI 48109, USA.
Abstract:
Notch signaling is known to regulate the proliferation and differentiation of intestinal stem and progenitor cells; however, direct cellular targets and specific functions of Notch signals had not been identified. We show here in mice that Notch directly targets the crypt base columnar (CBC) cell to maintain stem cell activity. Notch inhibition induced rapid CBC cell loss, with reduced proliferation, apoptotic cell death and reduced efficiency of organoid initiation. Furthermore, expression of the CBC stem cell-specific marker Olfm4 was directly dependent on Notch signaling, with transcription activated through RBP-Jκ binding sites in the promoter. Notch inhibition also led to precocious differentiation of epithelial progenitors into secretory cell types, including large numbers of cells that expressed both Paneth and goblet cell markers. Analysis of Notch function in Atoh1-deficient intestine demonstrated that the cellular changes were dependent on Atoh1, whereas Notch regulation of Olfm4 gene expression was Atoh1 independent. Our findings suggest that Notch targets distinct progenitor cell populations to maintain adult intestinal stem cells and to regulate cell fate choice to control epithelial cell homeostasis.
Insights
Notch signaling directly maintains intestinal stem cell activity by targeting crypt base columnar (CBC) cells. This regulation is crucial for controlling cell proliferation, differentiation, and overall intestinal homeostasis.
Area of Science:
- Gastroenterology
- Developmental Biology
- Stem Cell Biology
Background:
- Notch signaling is recognized for its role in regulating intestinal stem and progenitor cells.
- Specific cellular targets and functions of Notch signals within the intestine remained unidentified.
Purpose of the Study:
- To identify the direct cellular targets of Notch signaling in the intestinal crypt.
- To elucidate the specific functions of Notch signals in maintaining intestinal stem cell activity and regulating cell fate.
Main Methods:
- In vivo mouse models were utilized to investigate Notch signaling pathways.
- Analysis involved assessing cell proliferation, apoptosis, and differentiation markers.
- Gene expression analysis focused on stem cell markers like Olfm4 and transcription factors such as Atoh1.
Main Results:
- Notch signaling directly targets crypt base columnar (CBC) cells, maintaining their stem cell activity.
- Notch inhibition led to CBC cell loss, reduced proliferation, increased apoptosis, and impaired organoid initiation.
- Notch signaling regulates Olfm4 expression via RBP-Jκ binding sites and influences progenitor cell differentiation into secretory lineages, partly dependent on Atoh1.
Conclusions:
- Notch signaling directly maintains intestinal stem cell function by targeting CBC cells.
- Notch signaling regulates epithelial cell fate decisions, promoting homeostasis in the adult intestine.
- The findings highlight Notch's dual role in stem cell maintenance and differentiation control within the intestinal epithelium.
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