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Updated: May 25, 2026

Synchrotron X-ray Microdiffraction and Fluorescence Imaging of Mineral and Rock Samples
Published on: June 19, 2018
From synthetic to biogenic Mg-containing calcites: a comparative study using FTIR microspectroscopy
Xia Long1, Michael J Nasse, Yurong Ma
1Beijing National Laboratory for Molecular Sciences, College of Chemistry, Peking University, Beijing, 100871, China.
The formation of high Mg calcite in organisms like sea urchins remains a puzzle. FTIR microspectroscopy (FTIRM) reveals amorphous calcium carbonate (ACC) in sea urchin teeth, a finding not seen in other biominerals.
Area of Science:
- Biomineralization
- Geochemistry
- Spectroscopy
Background:
- The formation of thermodynamically unstable high Mg calcite in biological organisms is a long-standing enigma.
- Conventional methods like FTIR and XRD have limitations in detecting local disorder, such as amorphous phases or Mg ion occlusion in calcite.
- FTIR microspectroscopy (FTIRM) offers enhanced capabilities for characterizing local structural variations in calcium carbonate.
Purpose of the Study:
- To systematically characterize synthetic and biogenic Mg-containing calcium carbonates, particularly sea urchin teeth (SUT).
- To compare FTIRM data with conventional KBr pellet FTIR and X-ray diffraction (XRD) measurements.
- To investigate the presence and distribution of amorphous calcium carbonate (ACC) in biominerals.
Main Methods:
- Utilized two FTIRM instruments for detailed characterization of Mg-containing calcium carbonate samples.
- Compared FTIRM spectra with KBr pellet FTIR spectra from geogenic calcite and dolomite minerals.
- Applied multi-peak curve fitting analysis on the in-plane-bending (ν(4)) and out-of-plane (ν(2)) bands.
Main Results:
- Identified two singlet bands (∼860-865 cm⁻¹ and ∼695-704 cm⁻¹) in SUT FTIRM spectra, attributed to amorphous calcium carbonate (ACC).
- Reported the first evidence of ACC at the mature end of sea urchin teeth (SUT).
- Observed no ACC in three other studied biominerals.
- Demonstrated that both ν(4) and ν(2) bands shift to higher wavenumbers with increasing Mg substitution for Ca in calcite lattices, as evidenced by FTIRM.
Conclusions:
- FTIRM is a powerful tool for detecting amorphous calcium carbonate (ACC) and local disorder in Mg-calcite biominerals.
- The presence of ACC in sea urchin teeth suggests a distinct biomineralization pathway.
- Mg content in calcite lattices influences vibrational modes (ν(4) and ν(2)), providing insights into Mg-calcite structure.
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