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Nuclear Magnetic Resonance Spectroscopy for the Identification of Multiple Phosphorylations of Intrinsically Disordered Proteins
Published on: December 27, 2016
Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect
Akella V S Sarma1, Asokan Anbanandam, Allek Kelm
1Biochemistry Department, University of Missouri, Columbia, Missouri 65211, United States.
Abstract:
Phosphomannomutase/phosphoglucomutase contributes to the infectivity of Pseudomonas aeruginosa, retains and reorients its intermediate by 180°, and rotates domain 4 to close the deep catalytic cleft. Nuclear magnetic resonance (NMR) spectra of the backbone of wild-type and S108C-inactivated enzymes were assigned to at least 90%. (13)C secondary chemical shifts report excellent agreement of solution and crystallographic structure over the 14 α-helices, C-capping motifs, and 20 of the 22 β-strands. Major and minor NMR peaks implicate substates affecting 28% of assigned residues. These can be attributed to the phosphorylation state and possibly to conformational interconversions. The S108C substitution of the phosphoryl donor and acceptor slowed transformation of the glucose 1-phosphate substrate by impairing k(cat). Addition of the glucose 1,6-bisphosphate intermediate accelerated this reaction by 2-3 orders of magnitude, somewhat bypassing the defect and apparently relieving substrate inhibition. The S108C mutation perturbs the NMR spectra and electron density map around the catalytic cleft while preserving the secondary structure in solution. Diminished peak heights and faster (15)N relaxation suggest line broadening and millisecond fluctuations within four loops that can contact phosphosugars. (15)N NMR relaxation and peak heights suggest that domain 4 reorients slightly faster in solution than domains 1-3, and with a different principal axis of diffusion. This adds to the crystallographic evidence of domain 4 rotations in the enzyme, which were previously suggested to couple to reorientation of the intermediate, substrate binding, and product release.
Insights
Phosphomannomutase/phosphoglucomutase enzyme activity is crucial for Pseudomonas aeruginosa infectivity. NMR studies reveal its structural dynamics and how mutations affect substrate processing and enzyme function.
Area of Science:
- Biochemistry
- Structural Biology
- Microbiology
Background:
- Phosphomannomutase/phosphoglucomutase is vital for Pseudomonas aeruginosa virulence.
- Understanding its catalytic mechanism and structural dynamics is key to developing anti-infective strategies.
Purpose of the Study:
- To elucidate the structural and dynamic properties of phosphomannomutase/phosphoglucomutase.
- To investigate the impact of the S108C mutation on enzyme activity and conformation.
Main Methods:
- Nuclear Magnetic Resonance (NMR) spectroscopy (1H, 13C, 15N) to analyze enzyme structure and dynamics.
- Site-directed mutagenesis (S108C) to probe enzyme function.
- Analysis of substrate and intermediate binding kinetics.
Main Results:
- NMR analysis confirmed high structural similarity between solution and crystal structures.
- The S108C mutation impaired catalytic efficiency (kcat) but was partially rescued by the glucose 1,6-bisphosphate intermediate.
- NMR data indicated millisecond-timescale dynamics in flexible loops and distinct rotational dynamics of domain 4.
Conclusions:
- The enzyme's conformational flexibility, particularly domain 4 rotation, is integral to its catalytic cycle.
- Substrate phosphorylation state and conformational dynamics influence enzyme activity and substrate processing.
- These findings provide insights into Pseudomonas aeruginosa infectivity mechanisms.
