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Updated: May 25, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
Published on: December 7, 2021
An application of monotone functions decomposition to the reconstruction of gene regulatory networks
H Chang1, G Richard, A A Julius
1Dept of Mechanical Engineering, Boston University, Boston, MA 02215, USA. rahul.jhu@gmail.com
Abstract:
We describe the reconstruction of a gene regulatory network involved with the Toll-like Receptor signaling pathways. By applying our recent identification algorithm to a time series gene expression dataset, we identify regulatory interactions between genes and construct discrete-time piece-wise affine regulatory functions. Our validation shows that our model predicts the expression levels of the genes involved in the network with good accuracy.
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