ATR-ATRIP kinase complex triggers activation of the Fanconi anemia DNA repair pathway
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Updated: May 25, 2026

Detection and Visualization of DNA Damage-induced Protein Complexes in Suspension Cell Cultures Using the Proximity Ligation Assay
Published on: June 9, 2017
Tomoko Shigechi1, Junya Tomida, Koichi Sato
1Laboratory of DNA Damage Signaling, Department of Late Effects Studies, Radiation Biology Center, Kyoto University, Kyoto, Japan.
Abstract:
ATR kinase activates the S-phase checkpoint when replication forks stall at sites of DNA damage. This event also causes phosphorylation of the Fanconi anemia (FA) protein FANCI, triggering its monoubiquitination of the key DNA repair factor FANCD2 by the FA core E3 ligase complex, thereby promoting this central pathway of DNA repair which permits replication to be restarted. However, the interplay between ATR and the FA pathway has been unclear. In this study, we present evidence that their action is directly linked, gaining insights into this relationship in a DT40 mutant cell line that is conditionally deficient in the critical ATR-binding partner protein ATRIP. Using this system, we showed that ATRIP was crucial for DNA damage-induced FANCD2 monoubiquitination and FANCI phosphorylation. ATR kinase phosphorylated recombinant FANCI protein in vitro, which was facilitated by the presence of FANCD2. Mechanistic investigations revealed that the RPA region but not the TopBP1 region of ATRIP was required for FANCD2 monoubiquitination, whereas Chk1 phosphorylation relied upon both domains. Together, our findings identify ATR as the kinase responsible for activating the FA pathway of DNA repair.
Insights
This study reveals that ATR kinase directly activates the Fanconi anemia (FA) DNA repair pathway by phosphorylating FANCI. This essential DNA damage response is crucial for restarting replication after DNA damage.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- ATR kinase regulates the S-phase checkpoint during DNA replication stress.
- The Fanconi anemia (FA) pathway is critical for repairing DNA damage and restarting replication.
- The precise interaction between ATR and the FA pathway was previously undefined.
Purpose of the Study:
- To elucidate the direct link between ATR kinase and the Fanconi anemia (FA) pathway.
- To identify the role of ATRIP in DNA damage response signaling.
- To determine the kinase responsible for activating the FA pathway.
Main Methods:
- Utilized a DT40 mutant cell line conditionally deficient in ATRIP.
- Investigated DNA damage-induced FANCD2 monoubiquitination and FANCI phosphorylation.
- Performed in vitro kinase assays with recombinant FANCI and FANCD2 proteins.
Main Results:
- ATRIP is essential for DNA damage-induced FANCD2 monoubiquitination and FANCI phosphorylation.
- ATR kinase directly phosphorylates FANCI in vitro, a process facilitated by FANCD2.
- Specific domains of ATRIP are differentially required for FANCD2 monoubiquitination and Chk1 phosphorylation.
Conclusions:
- ATR kinase is the key kinase that activates the Fanconi anemia (FA) DNA repair pathway.
- This study establishes a direct mechanistic link between ATR signaling and FA pathway activation.
- Findings clarify a critical step in DNA repair and replication restart.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Restarting Stalled Replication Forks
The Intrinsic Apoptotic Pathway
Homologous Recombination
Long-patch Base Excision Repair

