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Updated: May 25, 2026

Individualized Reconstitution of Human Milk Microbiota: A Feasible Approach in Real-World Settings
Published on: February 7, 2025
Sharing of bacterial strains between breast milk and infant feces
Virginia Martín1, Antonio Maldonado-Barragán, Laura Moles
1Department of Nutrición, Bromatología y Tecn. Alimentos, UCM.
Insights
This study confirms that specific bacterial strains, including Bifidobacterium, Lactobacillus, and Staphylococcus, are shared between breast milk and infant feces. Breastfeeding likely plays a key role in transferring these beneficial bacteria to the infant gut.
Area of Science:
- Microbiology
- Human Gut Microbiome
- Infant Health
Background:
- Human milk is recognized as a potential source of bacteria for the infant gut microbiome.
- Previous studies have suggested a link between maternal milk bacteria and infant gut colonization.
Purpose of the Study:
- To investigate the presence and identity of specific bacterial strains at the strain level in breast milk and infant fecal samples from mother-infant pairs.
- To confirm the transfer of bacterial strains from mother to infant via breastfeeding.
Main Methods:
- Bacterial DNA (Staphylococcus, Lactobacillus, Bifidobacterium) was detected using quantitative reverse transcription PCR (qRT-PCR).
- Bacterial isolates were cultured on various agar media and identified using classical tests combined with molecular techniques (PCR, RAPD, PFGE, MLST genotyping).
- Strain-level identification was performed on bacteria isolated from 20 mother-infant pairs.
Main Results:
- The same specific bacterial strains of Bifidobacterium, Lactobacillus, and Staphylococcus were found in both breast milk and infant fecal samples.
- Breast milk and infant feces from 19 out of 20 mother-infant pairs shared common bacterial species and strains.
- Two mother-infant pairs shared four bacterial strains, with most pairs sharing two.
Conclusions:
- The findings confirm the sharing of identical bacterial strains between breast milk and infant feces in mother-infant pairs.
- Breastfeeding is indicated as a significant contributor to the transfer of maternal bacteria to the infant gut.
- This transfer supports the colonization of the infant's gut microbiome by specific maternal bacterial strains.
Abstract:
In previous years, it has been shown that human milk is a potential source of bacteria for the infant gut. The results of this work confirm the presence of the same specific bacterial strains of Bifidobacterium, Lactobacillus, and Staphylococcus in breast milk and infant fecal samples. The identity of bacteria isolated from breast milk and infant feces from 20 mother-infant pairs was investigated at the strain level. DNA from Staphylococcus, Lactobacillus, and Bifidobacterium was detected by qRTi-PCR in nearly all samples analyzed. These samples were cultured on different agar media. One colony representative of each morphology was selected and identified at the species level combining classical tests and molecular techniques (PCR, RAPD, PFGE, and/or MLST genotyping). Breast milk and infant feces from 19 mother-infant pairs shared different Staphylococcus, Lactobacillus, and/or Bifidobacterium species and strains. Significantly, 2 mother-infant pairs shared 4 bacterial strains although most pairs shared 2. These results confirm that breast milk and infant feces from mother-infant pairs share the same strain(s), indicating that breastfeeding could contribute to the bacterial transfer from the mother to the infant and, therefore, to the infant gut colonization.
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