Conservation and divergence of Grb7 family of Ras-binding domains

Raju V S Rajala1, Ammaji Rajala, Vivek K Gupta

  • 1Department of Ophthalmology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA. raju-rajala@ouhsc.edu

Protein & Cell
|January 25, 2012
PubMed

Insights

The Grb14 protein

Area of Science:

  • Molecular biology
  • Cell signaling
  • Protein-protein interactions

Background:

  • Ras proteins are key signal transducers, cycling between GDP-bound (inactive) and GTP-bound (active) states.
  • Ras-effector proteins utilize Ras-associating (RA) domains for GTP-dependent binding.
  • The Grb7 family (Grb7, Grb10, Grb14) features conserved RA domains.

Purpose of the Study:

  • To investigate the interaction between the Grb14 RA domain and the cyclic nucleotide-gated ion channel A1 (CTRCNGA1).
  • To explore the functional implications of this interaction on channel activity and its evolutionary context.

Main Methods:

  • Molecular modeling to assess structural similarities between CTRCNGA1 and Ras proteins.
  • Analysis of protein-protein interactions mediated by light and cyclic GMP (cGMP).
  • Comparative binding studies of Grb14 and Grb10 with Rab5 GTPase variants.

Main Results:

  • The RA domain of Grb14 binds to the C-terminal nucleotide-binding site of CTRCNGA1, inhibiting channel activity.
  • CTRCNGA1 possesses a Ras-like domain (RLD) with 50%-70% tertiary structural similarity to Ras.
  • Grb14 interacts with both Ras and nucleotide-binding proteins, suggesting later evolutionary development.

Conclusions:

  • Eukaryotic CNG channels may have evolved via gene fusion of prokaryotic ion channels and cyclic nucleotide-binding proteins.
  • Grb14's dual binding capability to Ras and nucleotide-binding proteins highlights its unique evolutionary trajectory.
  • The interaction between Grb14 and CTRCNGA1 is a novel, light and cGMP-regulated protein-protein interaction.

Related Concept Videos

The Ras Gene02:38

The Ras Gene

The Ras-gene-encoded proteins are regulators of signaling pathways controlling cell proliferation, differentiation, or cell survival. The Ras-gene family in humans constitutes three primary members—the HRas, NRas, and KRas. These genes code for four functionally distinct yet closely related proteins—the HRas, NRas, KRas4A, and KRas4B. The involvement of mutant Ras genes in human cancer was first discovered in 1982 and is among the most common causes of human tumorigenesis.
Ras is a superfamily...
Small GTPases - Ras and Rho01:24

Small GTPases - Ras and Rho

Ras and Rho are small monomeric GTPases that act downstream of receptor tyrosine kinase (RTK) and regulate various cellular processes. These GTPases switch between active and inactive states by binding to guanine nucleotides.
Three regulatory proteins control their activity:
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Conserved Binding Sites01:49

Conserved Binding Sites

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...
Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...
Rab Proteins01:14

Rab Proteins

Rab proteins constitute the largest family of monomeric GTPases, of which 70 members are present in humans. Rab proteins and their effectors regulate consecutive stages of vesicle transport such as vesicle transport, docking, and fusion to the correct recipient membrane.
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...