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Updated: May 25, 2026

A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
KRAS and BRAF mutations predict primary resistance to imatinib in gastrointestinal stromal tumors
Claudia Miranda1, Martina Nucifora, Francesca Molinari
1Department of Experimental Oncology and Molecular Medicine, Istituto Nazionale dei Tumori IRCCS Foundation, Milan, Italy.
Purpose:
Gastrointestinal stromal tumors (GIST) are characterized by gain-of-function mutations in KIT/PDGFRA genes leading to a constitutive receptor activation which is well counteracted by imatinib. However, cases in which imatinib as first-line treatment has no effects are reported (primary resistance). Our purpose is to investigate alterations in downstream effectors, not reported so far in mutated GIST, possibly explaining the primary resistance to targeted treatments.
Experimental Design:
Two independent naive GIST cohorts have been analyzed for KIT, PDGFRA, KRAS, and BRAF mutations by direct sequencing. Cell lines expressing a constitutively activated and imatinib-responding KIT, alone or in combination with activated KRAS and BRAF, were produced and treated with imatinib. KIT receptor and its downstream effectors were analyzed by direct Western blotting.
Results:
In naive GISTs carrying activating mutations in KIT or PDGFRA a concomitant activating mutation was detected in KRAS (5%) or BRAF (about 2%) genes. In vitro experiments showed that imatinib was able to switch off the mutated receptor KIT but not the downstream signaling triggered by RAS-RAF effectors.
Conclusions:
These data suggest the activation of mitogen-activated protein kinase pathway as a possible novel mechanism of primary resistance to imatinib in GISTs and could explain the survival curves obtained from several clinical studies where 2% to 4% of patients with GIST treated with imatinib, despite carrying KIT-sensitive mutations, do not respond to the treatment.
Insights
Activating mutations in KRAS or BRAF may cause primary resistance to imatinib in gastrointestinal stromal tumors (GIST) by activating downstream signaling pathways, even when KIT mutations are sensitive to imatinib.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Gastrointestinal stromal tumors (GIST) often harbor KIT/PDGFRA mutations leading to constitutive receptor activation.
- Imatinib is a targeted therapy effective against GIST, but primary resistance occurs in some patients.
- The mechanisms underlying primary imatinib resistance in GIST require further investigation.
Purpose of the Study:
- To investigate downstream effector alterations in GIST that may explain primary resistance to imatinib.
- To identify novel mechanisms of resistance beyond KIT/PDGFRA mutations.
Main Methods:
- Analysis of KIT, PDGFRA, KRAS, and BRAF mutations in two independent GIST cohorts.
- In vitro experiments using cell lines with specific mutations treated with imatinib.
- Western blotting to analyze KIT receptor and downstream effector activation.
Main Results:
- Concomitant activating mutations in KRAS (5%) or BRAF (2%) were found in GISTs with KIT/PDGFRA mutations.
- Imatinib effectively inhibited mutated KIT but could not block downstream signaling initiated by RAS-RAF effectors.
- This suggests that RAS-RAF pathway activation bypasses imatinib's inhibitory effect on KIT.
Conclusions:
- Activation of the mitogen-activated protein kinase (MAPK) pathway via RAS-RAF signaling is a potential mechanism for primary imatinib resistance in GIST.
- These findings may explain why a subset of GIST patients with imatinib-sensitive mutations do not respond to treatment.
- Targeting the MAPK pathway could be a future therapeutic strategy for resistant GIST.
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