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Updated: May 25, 2026

09:21
Serial Block-Face Scanning Electron Microscopy (SBF-SEM) of Biological Tissue Samples
Published on: March 26, 2021
Beam deceleration for block-face scanning electron microscopy of embedded biological tissue
Keisuke Ohta1, Shoji Sadayama, Akinobu Togo
1Division of Microscopic and Developmental Anatomy, Department of Anatomy, Kurume University School of Medicine, 67 Asahi-machi, Kurume, Fukuoka 830-0011, Japan. kohta@med.kurume-u.ac.jp
Summary
Beam deceleration (BD) imaging in scanning electron microscopy enhances biological specimen contrast and resolution. A novel holder improved 3D reconstruction for cellular analysis.
Area of Science:
- Electron microscopy
- Biological imaging
- Cellular ultrastructure
Background:
- Back-scattered electron (BSE) imaging is crucial for biological specimens.
- Low accelerating voltage and beam current are desirable for minimizing sample damage.
- Traditional methods face challenges in achieving high contrast and resolution simultaneously.
Purpose of the Study:
- To evaluate the effectiveness of beam deceleration (BD) for back-scattered electron (BSE) imaging.
- To improve compositional contrast and resolution in resin-embedded biological samples.
- To develop a solution for stage tilting-induced astigmatism in focused ion beam/scanning electron microscopy (FIB/SEM).
Main Methods:
- Applied beam deceleration (BD) with 0-4 kV to BSE imaging of en bloc stained rat hepatocytes.
- Utilized low accelerating voltage (1.5-3 keV) and low beam current (10 pA).
- Designed and tested a novel specimen holder for FIB/SEM applications to mitigate astigmatism.
Main Results:
- BD significantly enhanced compositional contrast and improved resolution at low landing energies.
- BD imaging was effective even at long working distances.
- The novel specimen holder enabled high-resolution (approx. 5 nm) 3D reconstruction of cellular organelles and mitochondrial cristae.
Conclusions:
- Beam deceleration is advantageous for block face imaging of biological materials.
- BD offers improved contrast and resolution under low-voltage, low-beam-current conditions.
- The developed specimen holder facilitates high-quality FIB/SEM analysis of cellular ultrastructure.
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