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Updated: May 25, 2026

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Selective regression of cancer cells expressing a splicing variant of AIMP2 through targeted RNA replacement by
1Department of Molecular Biology, Institute of Nanosensor and Biotechnology, Dankook University, Yongin 448-701, Republic of Korea.
Abstract:
AIMP2/p38 is a scaffolding protein critical for the assembly of the macromolecular tRNA synthetase complex. Moreover, AIMP2 harbors anti-proliferative activity and promotes cell death as a proapototic factor. A splicing variant of AIMP2 lacking exon 2 (AIMP2-DX2) is specifically generated by an alternative splicing process and is highly expressed in human lung cancer cells and the tissues of cancer patients. AIMP2-DX2 induces tumorigenesis by compromising the tumor suppressor function of normal AIMP2. Here, we describe a novel approach to cancer therapy that is based on trans-splicing ribozyme-mediated replacement of specific RNAs. We developed a specific ribozyme that can target and replace the splicing variant AIMP2-DX2 RNA with a new transcript selectively exerting therapeutic activity in AIMP2-DX2-expressing lung cancer cells. The RNA replacement was employed via a high-fidelity trans-splicing reaction with the targeted residue of the AIMP2-DX2 transcript, but not with normal AIMP2 RNA, in the cells. Noticeably, the ribozyme could selectively deliver the activity of a suicide gene into the AIMP2-DX2 RNA expressing lung cancer cells and thereby specifically and effectively retard the growth of the cancer cells with prodrug treatment. Therefore, the AIMP2-DX2 RNA-targeting trans-splicing ribozyme could be a useful genetic agent for efficient therapy targeting lung cancer.
Insights
A novel trans-splicing ribozyme targets the cancer-promoting AIMP2-DX2 RNA variant. This approach selectively replaces the aberrant RNA, offering a promising new strategy for lung cancer therapy.
Area of Science:
- Molecular Biology
- Cancer Genetics
- RNA Therapeutics
Background:
- AIMP2/p38 is a crucial scaffolding protein involved in tRNA synthetase complex assembly.
- AIMP2 possesses anti-proliferative and pro-apoptotic functions.
- A splicing variant, AIMP2-DX2, lacks exon 2, promotes lung tumorigenesis, and compromises normal AIMP2 tumor suppressor activity.
Purpose of the Study:
- To develop a novel RNA-based cancer therapy targeting the AIMP2-DX2 splicing variant.
- To investigate the efficacy of a trans-splicing ribozyme for selective RNA replacement in lung cancer cells.
Main Methods:
- Development of a specific trans-splicing ribozyme designed to target AIMP2-DX2 RNA.
- Utilizing high-fidelity trans-splicing reactions for RNA replacement within cancer cells.
- Delivery of a suicide gene via the ribozyme to induce cancer cell death.
Main Results:
- The developed ribozyme selectively targeted and replaced AIMP2-DX2 RNA, not normal AIMP2 RNA.
- The ribozyme effectively delivered a suicide gene into AIMP2-DX2-expressing lung cancer cells.
- Cancer cell growth was specifically and effectively retarded through prodrug treatment.
Conclusions:
- AIMP2-DX2 RNA-targeting trans-splicing ribozyme represents a novel therapeutic strategy for lung cancer.
- This RNA replacement approach offers selective targeting and effective cancer growth inhibition.
- The developed ribozyme holds potential as a genetic agent for efficient lung cancer therapy.
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