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Updated: May 25, 2026

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Published on: April 11, 2025
CLIPR-59 regulates TNF-α-induced apoptosis by controlling ubiquitination of RIP1
1Department of Bioresources, Hokkaido University Research Center for Zoonosis Control, North-20, West-10, Kita-ku, Sapporo, Hokkaido 001-0020, Japan. d-fuji@czc.hokudai.ac.jp
Abstract:
Tumor necrosis factor-α (TNF-α) has important roles in several immunological events by regulating apoptosis and transcriptional activation of cytokine genes. Intracellular signaling mediated by TNF-receptor-type 1 (TNFR1) is constituted by two sequential protein complexes: Complex-I containing the receptor and Complex-II-containing Caspase-8. Protein modifications, particularly ubiquitination, are associated with the regulation of the formation of these complexes. However, the underlying mechanisms remain poorly defined. Here, we identified CLIP-170-related 59 kDa protein (CLIPR-59) as a novel adaptor protein for TNFR1. Experimental reduction of CLIPR-59 levels prevented induction of apoptosis and activation of caspases in the context of TNF-α signaling. CLIPR-59 binds TNFR1 but dissociates in response to TNF-α stimulation. However, CLIPR-59 is also involved in and needed for the formation of Complex-II. Moreover, CLIPR-59 regulates TNF-α-induced ubiquitination of receptor-interacting protein 1 (RIP1) by its association with CYLD, a de-ubiquitinating enzyme. These findings suggest that CLIPR-59 modulates ubiquitination of RIP1, resulting in the formation of Complex-II and thus promoting Caspase-8 activation to induce apoptosis by TNF-α.
Insights
CLIPR-59 is a novel adaptor protein crucial for Tumor Necrosis Factor-alpha (TNF-α) signaling. It regulates RIP1 ubiquitination, promoting Complex-II formation and apoptosis induction via Caspase-8 activation.
Area of Science:
- Immunology
- Molecular Biology
- Cellular Signaling
Background:
- Tumor Necrosis Factor-alpha (TNF-α) orchestrates critical immunological responses, including apoptosis and cytokine gene activation.
- Intracellular TNF-α signaling involves sequential protein complexes, Complex-I and Complex-II, with ubiquitination playing a regulatory role.
- The precise mechanisms governing these complex formations remain incompletely understood.
Purpose of the Study:
- To identify novel proteins involved in TNF-α receptor-type 1 (TNFR1) signaling pathways.
- To elucidate the role of CLIPR-59 in TNF-α-mediated intracellular signaling, apoptosis, and protein ubiquitination.
Main Methods:
- Identification of CLIPR-59 as a TNFR1-interacting protein.
- Experimental reduction of CLIPR-59 levels to assess its functional impact.
- Analysis of protein complex formation (Complex-II), caspase activation, and RIP1 ubiquitination in response to TNF-α stimulation.
Main Results:
- CLIPR-59 was identified as a novel adaptor protein binding to TNFR1.
- Reduced CLIPR-59 levels inhibited TNF-α-induced apoptosis and caspase activation.
- CLIPR-59 is essential for Complex-II formation and regulates TNF-α-induced RIP1 ubiquitination through association with CYLD.
Conclusions:
- CLIPR-59 acts as a key modulator in TNF-α signaling by influencing RIP1 ubiquitination.
- This modulation facilitates Complex-II assembly, leading to Caspase-8 activation and subsequent apoptosis.
- CLIPR-59 represents a significant target for understanding and potentially manipulating TNF-α-driven cellular processes.
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